View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9393_low_1 (Length: 520)
Name: NF9393_low_1
Description: NF9393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9393_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Complemental strand, 52373892 - 52373397
Alignment:
| Q |
17 |
tcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatcccttcatccaaatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373892 |
tcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactcctcagaatcccttcatccaaatc |
52373793 |
T |
|
| Q |
117 |
tttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373792 |
tttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgtagtaactttgggaaactgttaaaa |
52373693 |
T |
|
| Q |
217 |
accacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctcctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373692 |
accacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaacaaagagatacctgttttctcctt |
52373593 |
T |
|
| Q |
317 |
ttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggta |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373592 |
ttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctcttgttaaagaagggtgaccaaggta |
52373493 |
T |
|
| Q |
417 |
accagaggcattacttggagatgaaacccaaatttctccttcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373492 |
accagaggcattacttggagatgaaacccaaatttctccttcaacaccatcttcaacagcttcaagtgtttcttcattaacaaccatgatgtccat |
52373397 |
T |
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