View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9393_low_10 (Length: 216)
Name: NF9393_low_10
Description: NF9393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9393_low_10 |
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| [»] scaffold1425 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 49277053 - 49276864
Alignment:
| Q |
14 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgttaacnnnnnnnnnnnnnnnnnnnngagtttgatct |
113 |
Q |
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| T |
49277053 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgttaacgaaagaagaagaagaagaaggagtttgatct |
49276954 |
T |
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| Q |
114 |
aaaacttgaagggtttcatggattgtggcgaggtgtgaacctaagacaaggttcaggcgctctttctctgctcttgctggcatctctgct |
203 |
Q |
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| T |
49276953 |
aaaacttgaagggtttcatggattgtggcgaggtgtgaacctaagacaaggttcaggcgctctttctctgctcttgctggcatctttgct |
49276864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 50484651 - 50484715
Alignment:
| Q |
14 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgt |
78 |
Q |
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| T |
50484651 |
acctgtggtggcttgtttggaaacttgttcagccatcttaatgacatcttcccatgttactttgt |
50484715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 41637802 - 41637866
Alignment:
| Q |
14 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgt |
78 |
Q |
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| T |
41637802 |
acctgtggtggcttgtttggaaacttgttcagccatcttaatgacatcttcccaggttactttgt |
41637866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 48499796 - 48499732
Alignment:
| Q |
16 |
ctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgtta |
80 |
Q |
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| T |
48499796 |
ctgtggtggcttgtttagaaacttgttcaaccatcttaatgacatcttcccaggttactttgtta |
48499732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 656 - 605
Alignment:
| Q |
147 |
tgtgaacctaagacaaggttcaggcgctctttctctgctcttgctggcatct |
198 |
Q |
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| T |
656 |
tgtgaacctaagagaaggttaagacgctctttctctgctcttgctggcatct |
605 |
T |
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