View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9393_low_2 (Length: 419)
Name: NF9393_low_2
Description: NF9393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9393_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 1889816 - 1890186
Alignment:
| Q |
16 |
taaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaaggttctcaatttt |
114 |
Q |
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| T |
1889816 |
taaacaacatgcttgtaagaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaaggttctcaatttt |
1889915 |
T |
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| Q |
115 |
gttgttagaaatttgagatggatattaatctgtagtgattatgtggaacatacttgcatatgcaggtgagttatctatcggattttctttttcttcagaa |
214 |
Q |
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| T |
1889916 |
gttgttataaatttgagatggatattaatctgtagtgattatgtggaacatacttgcatatgcaggtgagttatctatcggattttctttttcttcagaa |
1890015 |
T |
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| Q |
215 |
tatttaggtacttctctgaaaggagacgnnnnnnncaaaagatagaattgtctctgaaaggatccattgaaaggagacgttaagcttgtccgagaagaga |
314 |
Q |
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| T |
1890016 |
tttttaagtacttctctgaaaggtgacgttttttt-aaaagatagaattgtctctgaaaggatccattgaaaggagacgttaagcttgtccaagaagaga |
1890114 |
T |
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| Q |
315 |
gtcagattctaagttttgttttcgcctgcgacttgatcatgacagtaactaataaaatctcagatgtttatt |
386 |
Q |
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| T |
1890115 |
gtcacattctaagttttgttttcgcctgcgacttcatcatgacagtaactaataaaatctcatatgtttatt |
1890186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 1666418 - 1666241
Alignment:
| Q |
16 |
taaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaaggttctcaatttt |
114 |
Q |
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| T |
1666418 |
taaacaacatgcttgtaagaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaaggttctcaatttt |
1666319 |
T |
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| Q |
115 |
gttgttagaaatttgagatggatattaatctgtagtgattatgtggaacatacttgcatatgcaggtgagttatctat |
192 |
Q |
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| T |
1666318 |
gttgttagaaattagagatggatattaatctgtagtgattatgtggaacatacttgcatatgcaggtgagttatctat |
1666241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 1892890 - 1892989
Alignment:
| Q |
16 |
taaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaaggttctcaatttt |
114 |
Q |
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| T |
1892890 |
taaacaacatgcttgtaagaggctatacaaatttgatgttgtcaagtatagttgataattatatagatggaagggatggagggaaaaagttctcaatttt |
1892989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 5999420 - 5999562
Alignment:
| Q |
32 |
agaggctatacaaattggatgtattcaagtagagttgataattatat--agttggtagggatagaaggaaaaggttctcaattttgttgttagaaatttg |
129 |
Q |
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||||||||||||||| |||||| | |||| |||||| |||| |||| | ||| |||||| |||||||||| |||||||||||||||| |||||||| |
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| T |
5999420 |
agaggctatacaaatcggatgt-tgcaagcagagtttataacaatatgaatatggaagggatggaaggaaaagtttctcaattttgttgtccgaaatttg |
5999518 |
T |
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| Q |
130 |
agatggatattaatctgtagtgattatgtggaacatacttgcat |
173 |
Q |
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| T |
5999519 |
agatggatattaatctgtagtgattatgttgaacatacttgcat |
5999562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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