View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9393_low_4 (Length: 245)
Name: NF9393_low_4
Description: NF9393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9393_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 10290323 - 10290210
Alignment:
| Q |
3 |
tccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290323 |
tccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaatt |
10290224 |
T |
|
| Q |
103 |
cgttcatatttatt |
116 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10290223 |
cgttcatatttatt |
10290210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 10290155 - 10290052
Alignment:
| Q |
123 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290155 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
10290056 |
T |
|
| Q |
223 |
acac |
226 |
Q |
| |
|
|||| |
|
|
| T |
10290055 |
acac |
10290052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 9747056 - 9747171
Alignment:
| Q |
1 |
ggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaa |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| || || ||||||| ||||| |
|
|
| T |
9747056 |
ggtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaagaa |
9747155 |
T |
|
| Q |
101 |
ttcgttcatatttatt |
116 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
9747156 |
ttcgttcatacttatt |
9747171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10298725 - 10298669
Alignment:
| Q |
1 |
ggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298725 |
ggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
10298669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 9747370 - 9747461
Alignment:
| Q |
135 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga |
229 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9747370 |
ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaactacactga |
9747461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
| Q |
58 |
ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10298525 |
ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt |
10298467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 10298270 - 10298170
Alignment:
| Q |
126 |
tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca |
225 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||| ||| | |||||||||| |||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
10298270 |
tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaactaca |
10298174 |
T |
|
| Q |
226 |
ctga |
229 |
Q |
| |
|
|||| |
|
|
| T |
10298173 |
ctga |
10298170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 37743885 - 37743978
Alignment:
| Q |
135 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37743885 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactga |
37743978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 34694519 - 34694426
Alignment:
| Q |
135 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34694519 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactga |
34694426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 34716931 - 34716838
Alignment:
| Q |
135 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactga |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34716931 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactga |
34716838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University