View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9393_low_5 (Length: 236)
Name: NF9393_low_5
Description: NF9393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9393_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 1713552 - 1713349
Alignment:
| Q |
17 |
agatgataccaatgaaagagtggttcctacacaacctgagatgaaacatttgaagtcaaaagtgttccacgaaaccctccctcggtatgctgtgtatcct |
116 |
Q |
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| T |
1713552 |
agatgataccaatgaaagagtggttcctacacaacctgagatgaaacatttgaagtcaaaagtgttccacgaaaccctccctcggtatgctgtgtatcct |
1713453 |
T |
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| Q |
117 |
ttttctcgttacacagctcatctgtaaaagatggaatatgttcatttctgtgcataagaggaaaaagataaagtcatcaagtaaaattatcaaatagctt |
216 |
Q |
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| T |
1713452 |
ttttctcgttacacagctcatctgcaaaagatggaatatgttcatttctgtgcataagaggaaaaagataaagtcatcaagtaaaattatcaaatagctt |
1713353 |
T |
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| Q |
217 |
acca |
220 |
Q |
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|||| |
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| T |
1713352 |
acca |
1713349 |
T |
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