View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_high_3 (Length: 458)
Name: NF9395_high_3
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 54023678 - 54023249
Alignment:
| Q |
18 |
gtggtagcattattaaactttgtcaatttccaattccatttatatatattagtttgattcatagtttgcaacgttaatttcatcttcactcgatcattat |
117 |
Q |
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| T |
54023678 |
gtggtagcattattaaactttgtcaatttccaattccatttatatatattagttcgattcatagtttgcaacgttaatttcatcttcactcgatcattat |
54023579 |
T |
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| Q |
118 |
tgtcaaaaccatgggaaactgtttggcaaattcaggtgatggcaagaagactcagaaaaagactacttctacctataaacaacggaacaatacttcttct |
217 |
Q |
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| T |
54023578 |
tgtcaaaaccatgggaaactgtttggcaaattcaggtgatggcaagaagactcagaaaaagactacttctacctataaacaacggaacaatacttattct |
54023479 |
T |
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| Q |
218 |
gcaggtatttgaatgattaatcatat------agtatgttttcttatagttagatcatttaattgatttatttgaaactgattatggtgcagattatgag |
311 |
Q |
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| T |
54023478 |
gcaggtatttgtatgattaatcatatagtagtagtatgttttcttatagttagatcatttaattgatttatttgaaactgattatggtgcagattatgag |
54023379 |
T |
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| Q |
312 |
agaagtgttggcgccaaaatcgcggtagcggagaaggaaaatggagagagcctgagaactacagtagctggtggtggaaaaattgtgaagccgaatctaa |
411 |
Q |
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| T |
54023378 |
agaagtgttggcgccaaaatcgcggtagcggagaaggaaaatggagagagcctgagaactacagtagctggtggtggaaaaattgtgaagccgaatctaa |
54023279 |
T |
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| Q |
412 |
aaatgttcacattggatgagttgaaaagtg |
441 |
Q |
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| T |
54023278 |
aaatgttcacattggatgagttgaaaagtg |
54023249 |
T |
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