View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_11 (Length: 412)
Name: NF9395_low_11
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 397
Target Start/End: Original strand, 8734503 - 8734896
Alignment:
| Q |
2 |
ttggtggtattgggttcaaatccggataaaggnnnnnnnngagctgttaagtgcatttggaagagcttatttacacttatcttacgacatatacaattgt |
101 |
Q |
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| T |
8734503 |
ttggaggtattgggttcaaatccggataaaggaaaaaaa-gagctgttaagtgcatt-ggaagagcttatttacacttatcttacgacatatacaattgt |
8734600 |
T |
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| Q |
102 |
gtaagtatttaggagagaatatgaaaaaatagcttatgagatgttcgtaaactgtctttgctcggatacttaggttgcagctgaaagctttttgcccctc |
201 |
Q |
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| T |
8734601 |
gtaagtatttaggagagaatatgaaaaaatagcttatgagatgttcgtaaattgtctttgctcggatacttaggttgcagctgaaagctttttgcccctc |
8734700 |
T |
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| Q |
202 |
ctnnnnnnngtgttcagcggggatcgatcctnnnnnnnacaagtaacactggcaatgatttccatgctttaaaaaggaaagaaataaatgtgtaaaacat |
301 |
Q |
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| T |
8734701 |
ctaaaaaaagtgttcagcggggatcgatcctcccccccacaagtaacaccggcaatgctttccatgctttaaaaaggaaagaaataaatgtgtaaaacat |
8734800 |
T |
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| Q |
302 |
taaaacagaatggtataccatgctggagttgactagactgatctagttcagatgcccctggtactggtagaagagtaacctgatcagccacttttt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8734801 |
taaaacagaatggtataccatgctggagttgactagactgatctagttcagatgctcctggtactggtagaagagtaacctgatcagccacttttt |
8734896 |
T |
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