View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_13 (Length: 410)
Name: NF9395_low_13
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 23 - 394
Target Start/End: Original strand, 47885197 - 47885564
Alignment:
| Q |
23 |
tactgagttttaaaaaataagctgcaagataagttttgtatctaaacagggcctaatag--tttgtgataggctgatttgtgtttgaatttgatttggga |
120 |
Q |
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| T |
47885197 |
tactgagttttcaacaataagatgcaaaata-gttttctatctaaacagggcataatataatttgtgataggctggtttgtgtttgaatttgaattggga |
47885295 |
T |
|
| Q |
121 |
actttccaattcttgtttcaatttcaggaagattcaatttggttgtttactgctgaacattttgtgggttctcgaccattcacagttcaagcaaactatc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885296 |
actttccaattcttgtttcaatttcaggaagattcaatttggttgtttactgctgaaaattttgtgggttctcgaccattcacagttcaagcaaactatc |
47885395 |
T |
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| Q |
221 |
caggtttttctgaaggtagtcattttttactgaatgagtaaagaattgaccagttcnnnnnnnnnnnngatgaatgtatatgttattaatttatgcattc |
320 |
Q |
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||||||||||||||||||| || |||| ||||||||||||||||||||||| ||| ||||||| || |||||| || ||||||| |
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| T |
47885396 |
caggtttttctgaaggtagcaatattttgctgaatgagtaaagaattgaccatttctttttctttgccgatgaatatacatgtta-----ttgtgcattc |
47885490 |
T |
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| Q |
321 |
aagtaaattctgaatttggttaatgattgtcaggtattgaagtaggtgatgaaattgttatagatggtggaatg |
394 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885491 |
aagtgaattctgaatttggttaatgattgtcaggtattgaagtaggtgatgaaattgttatagatggtggaatg |
47885564 |
T |
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