View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_18 (Length: 356)
Name: NF9395_low_18
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 23358208 - 23358536
Alignment:
| Q |
19 |
agaaagaccatagtgatcatggtttttacttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaaccttacgag |
118 |
Q |
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| T |
23358208 |
agaaagaccatagtgatcatggcttttacttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaaccttacgag |
23358307 |
T |
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| Q |
119 |
cggtcttaataggcaactaacagcttggaagaattgggatgacccttcttcgggtcaaacgacttatggctacataagaagtgacaatcctgaatcggag |
218 |
Q |
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| T |
23358308 |
cggtcttaataggcaactaacagcttggaagaattgggatgacccttcttcgggtcaaacgacttatggctacataagaagtgacaatcctgaatcggag |
23358407 |
T |
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| Q |
219 |
ataaggaatggttcgtcgatgatatacagaagtggacctttcaatggtattcgtttcgctgctacacaaaaattgaaacatgttccattattcaacgtcg |
318 |
Q |
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| T |
23358408 |
ataaggaatggttcgtcgatgatatacagaagtggacctttcaatggtattcgtttcgctgctacacaaaaattaaaacatgttccattattcaacgtcg |
23358507 |
T |
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| Q |
319 |
attttgtgtacaaaaaggatgagtattat |
347 |
Q |
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| T |
23358508 |
attttgtgtacaaaaaggatgagtattat |
23358536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 23343587 - 23343525
Alignment:
| Q |
48 |
ttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaac |
110 |
Q |
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| T |
23343587 |
ttgtggcagagttttgactatccaagtgatacatttttgccaggaatgaagcttggatggaac |
23343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 23383656 - 23383718
Alignment:
| Q |
48 |
ttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaac |
110 |
Q |
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| T |
23383656 |
ttgtggcagagttttgactatccaagtgatacatttttgccaggaatgaagcttggatggaac |
23383718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 31705238 - 31705291
Alignment:
| Q |
45 |
tacttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaag |
98 |
Q |
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| T |
31705238 |
tacttgtggcaaagctttgactatccctgtgatacaattttgccagggatgaag |
31705291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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