View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_19 (Length: 349)
Name: NF9395_low_19
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 34992925 - 34992604
Alignment:
| Q |
20 |
ctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagccaaattgtaggcattccagttcctaacttctaatgtgcgtt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992925 |
ctgagcacataattccattgcaaactgaaggcaatttaagtgctctgattctgcagagccaaattgtaggcattccagttcctaacttctaatgtgcgtt |
34992826 |
T |
|
| Q |
120 |
cgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcccagctggggatgggagttggggactgtctgcattaatttgtgatgctgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992825 |
cgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcccagctggggatgggagttggggactgtctgcattaatttgtgatgctgg |
34992726 |
T |
|
| Q |
220 |
cggagtagttgttgaggcgaactcctgtaaacggcagaggctatggcaatgaaggttgggctgcactttgatagagtgatggtctttttaaatttattta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34992725 |
cggagtagttgttgaggcgaactcctgtaaacggcagaggctatggcaatgaaggttgggctgcactttgatagggtgatggtctttttaaatttattta |
34992626 |
T |
|
| Q |
320 |
ctgaatcattctctcaacacca |
341 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34992625 |
ctgaatcattctctcaacacca |
34992604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 34986106 - 34985780
Alignment:
| Q |
20 |
ctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagccaaattgtaggcattccagttccta-----acttctaatgt |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34986106 |
ctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagccaaattgtaggcattccagttcctatcctaacttctaatgt |
34986007 |
T |
|
| Q |
115 |
gcgttcgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcccagctggggatgggagttggggactgtctgcattaatttgtgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986006 |
gcgttcgactccaccatcaccaagctggtttaaactgaatattgatgctccaggcccagctggggatgggagttggggactgtctgcattaatttgtgat |
34985907 |
T |
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| Q |
215 |
gctggcggagtagttgttgaggcgaactcctgtaaacggcagaggctatggcaatgaaggttgggctgcactttgatagagtgatggtctttttaaattt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34985906 |
gctggcggagtagttgttgaggcgaactcctgtaaacggcagaggctatggcaatgaaggttgggctgcactttgatagggtgatggtctttttaaattt |
34985807 |
T |
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| Q |
315 |
atttactgaatcattctctcaacacca |
341 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
34985806 |
atttactgaatcattctctcaacacca |
34985780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 34978355 - 34978240
Alignment:
| Q |
20 |
ctgagcacataattccattgcaaactgaaggcaatttaagtgctcagattctgcagagccaaattgtaggcattccagttcctaacttctaatgtgcgtt |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |
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| T |
34978355 |
ctgagcgcataattccattgcaaactgaaggcaatttaagtgctctgattctgcagagccaaattgtaggcattccagttcccaac-tctaatgtgcgct |
34978257 |
T |
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| Q |
120 |
cgactccaccatcacca |
136 |
Q |
| |
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|||||||| |||||| |
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| T |
34978256 |
gaactccaccgtcacca |
34978240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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