View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_2 (Length: 515)
Name: NF9395_low_2
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 15 - 507
Target Start/End: Original strand, 10155259 - 10155769
Alignment:
| Q |
15 |
ataaacaactccatgcttctcaaaacttttttccttcaataaaatgattgcttatggcatgtcttgtttcagaaatactagcattttttgcaagnnnnnn |
114 |
Q |
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| T |
10155259 |
ataaacaactccatgcttctcaaaacttttttccttcaataaaatgattgcttatggcatgtcttgtttcagaaata---gcattttttgcaagaaaaaa |
10155355 |
T |
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| Q |
115 |
nnn-caattttattttactagtaaaagtatcactttgatacaatgaaaacaataaaaatattcactattttctatttaagtgaaaataatgtgatagtgt |
213 |
Q |
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| T |
10155356 |
aaaacaattttattttactagtaaaagtatcactttgatacaatgaaaacaataaaaatattcactattttctatttaagtgaaaataatttgatagtgt |
10155455 |
T |
|
| Q |
214 |
tccaagtccaacaaaaattaaagttgaagtggagaaaaagaatagaaaatgaaaatcaatcaattggataagaataggttccttnnnnnnngggtaagaa |
313 |
Q |
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| T |
10155456 |
tccaagtccaacaaaaattaaagttgaagtggagaaaaagaatagaaaatgaaaatcaatcaactgggtaagaatagattccttaaaaaaagggtaaaaa |
10155555 |
T |
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| Q |
314 |
ta-------------------gagttatagagttatagacctgtaacatagtctatgtcatattaatgtctggtcatgctattttattaaataaacaaga |
394 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||| |
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| T |
10155556 |
taggtcaaaccgcctgacatagagttatagagttatagacctataacatagtctatgtcatattcatgtcaggtcagactattttattaaataaactaga |
10155655 |
T |
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| Q |
395 |
ccaatgcatttttaaaaacatatttagcttattagc-nnnnnnnncatatttagctaatatcactcggattacaaactacctaaaaggcctttaaacata |
493 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
10155656 |
ccaatgcatttttaaaaacatatttagcttattagcaaaaaaaaacatatttagctaatatcactcggattacagactacctaaaaaacctttaaacata |
10155755 |
T |
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| Q |
494 |
tcagaataatctac |
507 |
Q |
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| T |
10155756 |
tcagactaatctac |
10155769 |
T |
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