View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_24 (Length: 307)
Name: NF9395_low_24
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 22581758 - 22582055
Alignment:
| Q |
1 |
agcaacgatgtcctggtcactaagccccatagctttgccaaacacatccctcaaatggtcagaacctgcaaaaatcaagaatcaaataatgagccaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22581758 |
agcaacgatgtcctggtcactaagccccatagctttgccaaacacatccctcaaatggtcagaacctgcaaaaatcaagaatcaaataatgagccaaaca |
22581857 |
T |
|
| Q |
101 |
actaccagtcaattgtaggcaataattcacatcacaagtccagaacactaacccttggtggcatcaggcaagcgaccctctggtggtggctcaggcttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22581858 |
actaccagtcaattgtaggcaataattcacatcgcaagtccagaacacttacccttggtggcatcaggcaagcgaccctctggtggtggctcaggcttgt |
22581957 |
T |
|
| Q |
201 |
cctgataattaaaccagaaaaaaggaccaattagcctccaaatataaaaatttaatagggtgaaaaacaaagatacatcggcaacttttgagaataat |
298 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| ||||| |
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| T |
22581958 |
cctgataattaaaccagaacaaaggaccaattagcctccaaatataaaaattaaatagggtgaaaaacaaagatacatcagcatcttttgagtataat |
22582055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1780429 - 1780487
Alignment:
| Q |
1 |
agcaacgatgtcctggtcactaagccccatagctttgccaaacacatccctcaaatggt |
59 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1780429 |
agcaacgatgtcctggtcactaagccccatagatttgccaaacacatccctcaaatggt |
1780487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 1780491 - 1780544
Alignment:
| Q |
150 |
aacccttggtggcatcaggcaagcgaccctctggtggtggctcaggcttgtcct |
203 |
Q |
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| T |
1780491 |
aaccctcggtagcatcaggcaagcgaccctctaatggtggctcaggcttgtcct |
1780544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 12348718 - 12348652
Alignment:
| Q |
130 |
catcacaagtccagaacactaacccttggtggcatcaggcaagcgaccctctggtggtggctcaggc |
196 |
Q |
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|||||||| || ||||||||||||||| || |||||| | |||||| | |||||||||||||||||| |
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| T |
12348718 |
catcacaaatcaagaacactaaccctttgttgcatcaagaaagcgatcatctggtggtggctcaggc |
12348652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 25282417 - 25282354
Alignment:
| Q |
130 |
catcacaagtccagaacactaacccttggtggcatcaggcaagcgaccctctggtggtggctca |
193 |
Q |
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|||||||| || ||||||||||||||| || |||||| | |||||| | ||||||||||||||| |
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| T |
25282417 |
catcacaaatcaagaacactaaccctttgttgcatcaagaaagcgatcatctggtggtggctca |
25282354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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