View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_26 (Length: 305)
Name: NF9395_low_26
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 11050918 - 11050693
Alignment:
| Q |
18 |
ttctcgttgtatgattgtaacgaagaaacctttgctaataatatgacataagtatcgttatgtcttatactaatttgttttattatagttgtgctttatt |
117 |
Q |
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| T |
11050918 |
ttctcgttgtatgattgtaacgaagaaacctttggtaata-tatgacataagtctcgttatgtcttatactaatttgttttattatagttgtgctttatt |
11050820 |
T |
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| Q |
118 |
gatnnnnnnnntatagcatctcttgcatcaaaatctattgattataaggtggttaaaaattaaaattgacatattagcttatgaaagacatactattatg |
217 |
Q |
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| T |
11050819 |
gataaaaaaaatatagcatctcttgcatcaaaatctattgattataaggtggttaaaaattaaaattgacatattagcttatgacagacatactattatg |
11050720 |
T |
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| Q |
218 |
tcatgaagcaaagagcagccacacata |
244 |
Q |
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| T |
11050719 |
tgatgacgcaaagagcagccacacata |
11050693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 11019773 - 11019677
Alignment:
| Q |
148 |
aaatctattgattataaggtggttaaaaattaaaattgacatattagcttatgaaagacatactattatgtcatgaagcaaagagcagccacacata |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11019773 |
aaatctattgattataaggtggttaaaaattaaaattgacatattagcttatcacagacatactattatgtcataaagcaaagagcagccacacata |
11019677 |
T |
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