View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9395_low_28 (Length: 299)
Name: NF9395_low_28
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 8375080 - 8375359
Alignment:
| Q |
5 |
acctttgaaataagacagggacgatccctcctctatagattccaatcttttcccaagcaggttgtgccatatcaaaatgctttagaggtgggttgcacca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8375080 |
acctttgaaataagacagggacgatccctcctctatagattccaatcttttcccaagcaggttgtgccatatcaaaatgctttagaggtgggttgcacca |
8375179 |
T |
|
| Q |
105 |
acctccatcgtcgtttggaagatcaaaatttggaggacagaaatttgtggctgttatggtaatagatcttccttttatgcaccatcttgggtctgtctta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8375180 |
acctccatcgtcgtttggaagatcaaaatttggaggacagaaatttgtggctgttatggtaatagatcttccttttatgcaccatcttgggtctgtttta |
8375279 |
T |
|
| Q |
205 |
taatcacaaatgattttgtagcattgcccacatgaagctccatcattaaacaaagcagtacttaatgcagctgttcttgt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8375280 |
taatcacaaatgattttgtagcattgcccacatgaagctccatcattaaacaaagcagtacttaatgcagctgttcttgt |
8375359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 38165178 - 38165142
Alignment:
| Q |
243 |
tccatcattaaacaaagcagtacttaatgcagctgtt |
279 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38165178 |
tccatcattaaacaaagcagtactcaatgcagctgtt |
38165142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 45507055 - 45507088
Alignment:
| Q |
244 |
ccatcattaaacaaagcagtacttaatgcagctg |
277 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
45507055 |
ccatcattaaacaaagcagtactcaatgcagctg |
45507088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 45512515 - 45512548
Alignment:
| Q |
244 |
ccatcattaaacaaagcagtacttaatgcagctg |
277 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
45512515 |
ccatcattaaacaaagcagtactcaatgcagctg |
45512548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University