View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_29 (Length: 276)
Name: NF9395_low_29
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 43552388 - 43552631
Alignment:
| Q |
18 |
tatagcatgctagaatttcttcgttctgattctggtttgtgaaatagttttaggaaatattttggaatatacataactaacattgatattaatgtacaag |
117 |
Q |
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| T |
43552388 |
tatagcatgctagaatttcttcgttctgattctggtttgtgaaatagttttaggaaatattttggaatatacataactaacattgatattaatgtacaag |
43552487 |
T |
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| Q |
118 |
ttttttacacatagcacttaatattttcaatttaggagccnnnnnnntaatcaatatgaatggtaaccctgtagataagagctttgaaaatctgaatttt |
217 |
Q |
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| T |
43552488 |
ttttttacac--agcacttaatattttcaatttaggagccaaaaaaataatcaatatgaatggtaaccctgtagataagagctttgaaaatctgaatttt |
43552585 |
T |
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| Q |
218 |
cactttccttatctgattcagcagctccatccccaatttcctttct |
263 |
Q |
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| T |
43552586 |
cactttccttatctgattcagcagctccatccccaatttcctttct |
43552631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 103 - 263
Target Start/End: Original strand, 43548473 - 43548633
Alignment:
| Q |
103 |
atattaatgtacaagttttttacacatagcacttaatattttcaatttaggagccnnnnnnntaatcaatatgaatggtaaccctgtagataagagcttt |
202 |
Q |
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| T |
43548473 |
atatgaatgtacaagttttctacacatagaacataatattttcattttaagagccaacaaattaatcaatatgaatgataaccctgtagataagagcttt |
43548572 |
T |
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| Q |
203 |
gaaaatctgaattttcactttccttatctgattcagcagctccatccccaatttcctttct |
263 |
Q |
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| T |
43548573 |
gaaaatctgaatcttcactttccttatctgattcagcagttccgtctccgctttcctttct |
43548633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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