View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9395_low_3 (Length: 490)
Name: NF9395_low_3
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Original strand, 24884494 - 24884969
Alignment:
| Q |
15 |
atcaaccattaaaaaactagatggtgtcagttacattgagcaatcaaccttataagtgtatttagagaaattagaggacagaagacatcaatagggtaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24884494 |
atcaaccattaaaaaactagatggtgtcagttacattgagcaatcaaccttataagtgtatttagagaaattagaggacagaagacatcaatagggtaag |
24884593 |
T |
|
| Q |
115 |
atggatgagatttaaataagtgcatcacttacagtatgagcagaaaccacacacaaatttgccatccgaacaactggcttctggggattattgtccaaaa |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24884594 |
atggatgagatttaaataagcgcatcacttacagtatgagcagaaaccacacacaaatttgccatccgaacaactggcttctggggattattgtccaaaa |
24884693 |
T |
|
| Q |
215 |
tgcgcatgttggaaagttcactctcaaggtccagtcgggttttacttatcattgtagtgaactgcatacattttaagatgtgcacaatgaacatgtcaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24884694 |
tgcgcatgttggaaagttcactctcaaggtccagtcgggttttacttatcattgtagtgaactgcatacattttaagatgtgcacaatgaacatgtcaag |
24884793 |
T |
|
| Q |
315 |
cacacctttcactgagtttgttgaagagaaacaaggtaaacaatcaacttactcttttgtcaatttcttctatgatttccatgtgacgaggaagcagttt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24884794 |
cacacctttcactgagtttgttgaagagaaacaaggtaaacaatcaacttactcttttgtcaatttcttctatgatttccatgtgacgaggaagcagttt |
24884893 |
T |
|
| Q |
415 |
ccacattacagattgagaccatttctccagtgcttcggggaggacagtgtggttagtgtaagcaattgtcctggtt |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24884894 |
ccacattacagattgagaccatttctccagtgcttcggggaggacagtgtggttagtgtaagcaattgtcctggtt |
24884969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University