View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_33 (Length: 256)
Name: NF9395_low_33
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 1820804 - 1821033
Alignment:
| Q |
18 |
atttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtccatctataaagaa |
117 |
Q |
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| T |
1820804 |
atttttgtcttgtttctcgagctcttcaacatgttctttaagttgtttcacataatcaatcgcttctcgaagtaatgaagccttgtccatctataaagaa |
1820903 |
T |
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| Q |
118 |
ggaatcgtaaaattttaatattataata-ttcttaaataagtaaatgattgaacttaatggttaataaactctactaaagtatgacttatttgaaaggat |
216 |
Q |
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| T |
1820904 |
ggaatcgtaaaattttaatattataatatttcttaaataagtaaatgattgaacttaatggttaataaactctactaaagtatgacttgtttgaaaggat |
1821003 |
T |
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| Q |
217 |
ttaggtttgatttatgagctgaacaccaaa |
246 |
Q |
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| T |
1821004 |
ttaggtttgatttatgagctgaacaccaaa |
1821033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 1841068 - 1841184
Alignment:
| Q |
18 |
atttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtccatctataaagaa |
117 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
1841068 |
atttttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaat |
1841167 |
T |
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| Q |
118 |
ggaatcgtaaaatttta |
134 |
Q |
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| T |
1841168 |
ggaatattaaaatttta |
1841184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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