View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_36 (Length: 242)
Name: NF9395_low_36
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 24885278 - 24885045
Alignment:
| Q |
9 |
ggacatcatttcccgattcaaggagaggaggcaaggaccttggaactggtccgagttcccgacaaaggttgccgtacaattgaatgatacccacccaacc |
108 |
Q |
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| T |
24885278 |
ggacatcatttcccgattcaaggagaggaggcaaggaccttggaactggtccgagttcccgacaaaggttgctatacaattgaatgatacccacccaacc |
24885179 |
T |
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| Q |
109 |
ctttcaatacctgagttgatgcgtttacttatggacgaagaagggcttggatgggatgaagcatgggaggttacatcaaagtcagtaaattgcagaactt |
208 |
Q |
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| T |
24885178 |
ctttcaatacctgagttgatgcgtttacttatggacgaagaagggcttggatgggatgaagcatgggaggttacatcaaagtcagtaaattgcagaactt |
24885079 |
T |
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| Q |
209 |
attgcgttgtgtggaaaagttgttttccatattc |
242 |
Q |
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| T |
24885078 |
attgcgttgtgtggaaaagttgttttccatattc |
24885045 |
T |
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