View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_44 (Length: 220)
Name: NF9395_low_44
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 6433203 - 6433009
Alignment:
| Q |
13 |
cagagatattttaattacatcggct--atatgcttccaaaatataagctatttctatatgaaaatcgagaacattcaaaaaagacaatagaccatgcata |
110 |
Q |
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| T |
6433203 |
cagagatattttaattacatcgccggcaaatgtttccaaaatataagctatttctatatgaaaatcgagaacgttcaaaaaagacaatagaccatgcata |
6433104 |
T |
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| Q |
111 |
catacaactggaatccaaagaagaacaatatgcaaaacaaaaaacagaaagcatggaaataacattggtaaagaaagattcatatgccaaatgtt |
205 |
Q |
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| T |
6433103 |
catacaactggaatccaaagaagaacaatatgcaaaacaaaaaacagaaagcatggaaataacattggtaaagaaagattcatatgccaaatgtt |
6433009 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 44186672 - 44186604
Alignment:
| Q |
44 |
ttccaaaatataagctatttctatatgaaaatcgagaacattcaaaaaagacaatagaccatgcataca |
112 |
Q |
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| T |
44186672 |
ttccaaaatgtacactatttctataggaaaattgagggcattcagtaaagacaaaagaccatgcataca |
44186604 |
T |
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