View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_49 (Length: 204)
Name: NF9395_low_49
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 2252673 - 2252479
Alignment:
| Q |
4 |
atcgccgatcactgtctatgagactacaacaactagctaagtgcacacataatttcaacacctctatgtttgatgcaagttacatggaatttagataaaa |
103 |
Q |
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| T |
2252673 |
atcgccgatcactgtctatgagactacaacaactagctaagtgcacacataatttcaacacctctatgtttgatgcaagttacatggaatttagataaaa |
2252574 |
T |
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| Q |
104 |
tgatgagatgttttttgtaactaggagtacaaatttctggttatatcattatctccagaagatagttgatagaaaatcagtccttatctctgtta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
2252573 |
tgatgagatgttttttgtaactaggagtacaaatttctggttatatcattatctccagaagatagttgataggaaatcagtccttatctttgtta |
2252479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 18948315 - 18948434
Alignment:
| Q |
76 |
atgcaagttacatggaatttagataaaat--gatgagatgttttttgtaactaggagtacaaatttctggttatatcattatct-ccagaagatagttga |
172 |
Q |
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||||||||| ||||| ||||||||||||| |||||||||| ||||| ||||||||| || ||| ||||||||||| || ||| |||||| |||| |
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| T |
18948315 |
atgcaagttccatggcatttagataaaattatatgagatgttctttgttactaggagttcagtttttctgttatatcattgcctcccacaagatatttga |
18948414 |
T |
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| Q |
173 |
tagaaaatcagtccttatct |
192 |
Q |
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|| ||||||| ||||||||| |
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| T |
18948415 |
taaaaaatcaatccttatct |
18948434 |
T |
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