View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_8 (Length: 425)
Name: NF9395_low_8
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 10394162 - 10394313
Alignment:
| Q |
1 |
taattgaattgggcaacaaccaactgtgaagactaaattaaatatttattctggtttaaaagagtacaaatgttcaatttgtgtttgacataacacactg |
100 |
Q |
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| T |
10394162 |
taattgaattgggcaacaaccaactgtgaagactaaattaaatatttattctggtttaaaagagtacaaatgttcaatttgtgtttgacataacacactg |
10394261 |
T |
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| Q |
101 |
ataaatacgttaatgtgaaagagcgatgagtcaccattttcttgatataatg |
152 |
Q |
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| T |
10394262 |
ataaatacgttaatgtgaaagagcgatgagtcaccattttcttgatataatg |
10394313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 10397228 - 10397336
Alignment:
| Q |
298 |
cctgttccccatcaagtctaaccagagttgggacacatgggcggggggtcctcactttacgctaagaacaatcacacaacatctctcccaatctccatca |
397 |
Q |
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| T |
10397228 |
cctgttccccatcaagtctaaccagagttgggacacatgggtggggggtcctcactttacgctaagaacaatcacacaacatctctcccaatctccatca |
10397327 |
T |
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| Q |
398 |
agttgagtc |
406 |
Q |
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| T |
10397328 |
agttgagtc |
10397336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 10395859 - 10395973
Alignment:
| Q |
192 |
ccatcgataaggtgagcatcactgattagatcattatgttgggccaagagcaattatagaagtgagttgaataccacttcatcacctaagacctcaagac |
291 |
Q |
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| T |
10395859 |
ccatccataaggtgagcatcactgattagatcattatgttgggctaagagcaattatacaagtgagttgaataccacttcatcacctaagacctcaagac |
10395958 |
T |
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| Q |
292 |
atttctcctgttccc |
306 |
Q |
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| T |
10395959 |
atttctcctgttccc |
10395973 |
T |
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