View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9395_low_9 (Length: 415)
Name: NF9395_low_9
Description: NF9395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9395_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 29008736 - 29008496
Alignment:
| Q |
13 |
gaattgatttcaacagaatcattttcgtgaaaatgcaaaaaacggttacgatcttatattattaatctttgaattttctgaaactttctatatattttgg |
112 |
Q |
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| T |
29008736 |
gaattgatttcaacagaatcattttcgtgaaaatacaaaaaacggttacgatcttatattattaatctttgaattttctgaaactttgtatatattttgg |
29008637 |
T |
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| Q |
113 |
taaagattttctgaaattttgttaaatctagcaagtgcttacaaactaggtaatgattagagtattaattaggttaaggtactttaggttcgtttcctaa |
212 |
Q |
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| T |
29008636 |
taaagaatttctgaaattttgttaaatctagcaagtgcttacaaactaggtaatgattagagtattaattaggttaaggtactttaggttcgtttcctaa |
29008537 |
T |
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| Q |
213 |
ttagttgaatttatatgaaactttattaactaatgatagag |
253 |
Q |
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| T |
29008536 |
ttagttgaatttatatgaaactttattaactaatgatagag |
29008496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 21408471 - 21408710
Alignment:
| Q |
16 |
ttgatttcaacagaatcattttcgtgaaaatgcaaaaaa--cggttacgatcttatattattaatctttgaattttctgaaactttctatatattttggt |
113 |
Q |
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| T |
21408471 |
ttgatttcaatagaatcatttttgtgaaaacacaaaaaaaacagttacgatcttgtataattaatctttgaattttctgaaactttgtatattttttggt |
21408570 |
T |
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| Q |
114 |
aaagattttctgaaattttgttaaatctagcaagtgcttacaaactaggtaatgattagagtattaattaggttaaggtactttaggttcgtttcctaat |
213 |
Q |
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| T |
21408571 |
aaagattttctaaaattttgtaaaatctagcaagtgcttgcaaactaagtaatgattagagtattaattaggttaaggtaatttaggtttgtttcctaat |
21408670 |
T |
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| Q |
214 |
tagttgaatttatatgaaactttattaactaatgatagag |
253 |
Q |
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| T |
21408671 |
tagttgaatttatctaaaactttattaactgatgatagag |
21408710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 29008432 - 29008345
Alignment:
| Q |
317 |
gataatatgataattcattcataacaatcatgctttgtgtttagtttcattttccttctgtgtatatttcgtgattgaatttgaatcc |
404 |
Q |
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| T |
29008432 |
gataatatgataattcattcataacaatcatgctttgtgtttagtttcattttccttctgtgtatatttcgtgattgaatttgaatcc |
29008345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 21408768 - 21408855
Alignment:
| Q |
317 |
gataatatgataattcattcataacaatcatgctttgtgtttagtttcattttccttctgtgtatatttcgtgattgaatttgaatcc |
404 |
Q |
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| T |
21408768 |
gataatatgataattcattcataacaatcatgctttgtgtttatttccattttccctctgtctatatttcgtgattgaatttgaatcc |
21408855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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