View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9396_high_1 (Length: 740)
Name: NF9396_high_1
Description: NF9396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9396_high_1 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 25 - 702
Target Start/End: Original strand, 49824847 - 49825515
Alignment:
| Q |
25 |
gggtcgtttttaaacatgaagaaagaatttgattgtattataatataggtaatgttacctccactggcgtgtaaccggatagattcagcatattgtcgtg |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49824847 |
gggtcgtttttaaacatgaagaaaaaatttgattatattatagtataggtaatgttacctccactggcgtgtcaccggatagattcagcatattgtcgtg |
49824946 |
T |
|
| Q |
125 |
tgtatcttcgtctatatcttcatgaccaaccttcatnnnnnnnnctcacttgataagtaaaaaataaactacattatataatctgtatatggatcattaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49824947 |
tgtatcttcgtctatatcttcatgaccaaccttcataaaaaaaacttacttgataagtaaaaaataaactacattatataatctgtatatggatcattaa |
49825046 |
T |
|
| Q |
225 |
cataagtttaaagaaggtaccttaatattatgcaaagttacaaatctcttaataagatcgacatcatcatacacccgcttcacagcttagttacgccatc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
49825047 |
cataagtttaaagaaggtaccttaatattatgcaaagttacaaatctcttaataagatcgacatcatcagacacccgcttcacaacttagttacgccatc |
49825146 |
T |
|
| Q |
325 |
catgcttcaagttgccatcagttatctcaactttaaacaacannnnnnnngtctatgaacaaatccagatcagcaggatattcgtcattgtaatgttgtg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49825147 |
catgcttcaagttgccatcagttatctcgactttaaacaacattttttt-gtctatgaacaaatccagatcagcaggatattcgccattgtaatgttgtg |
49825245 |
T |
|
| Q |
425 |
aagagtcacaaattgattcatcagatgtccttttgaccgcatagttgcgccaattatgcattaagttcccatccgtaattccaaccttaaatagcatttg |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49825246 |
aagagtcacaaattgattcatcagatgtccttttgacagcatagttgcgccaattatgcattaagttcccatccgtaatttcaaccttaaatagcatttg |
49825345 |
T |
|
| Q |
525 |
ttttccaacaacaatatcaaattcatttggatactcgctcgcttgagggtttaccctgatcaaatgaaacgcactccaaattaccaacatgcataaaaat |
624 |
Q |
| |
|
||||||||||| |||||| || ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
49825346 |
ttttccaacaaaaatatccaactcattgggata----ctcgcttgagggtttaccctgatcaaataaaacgcactccaaattaataacatgcataaaaat |
49825441 |
T |
|
| Q |
625 |
acgatcgtatcacaatatnnnnnnnngatataaccaaagtgatcataatttacctgactgtttgcctcaatcaaatct |
702 |
Q |
| |
|
|| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49825442 |
acaatcatatcacaata----aaaaagctataaccaaagtgatcataatttacctgactgtttgcctcaatcaaatct |
49825515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 535
Target Start/End: Complemental strand, 232658 - 232573
Alignment:
| Q |
451 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
535 |
Q |
| |
|
||||||||||| | ||| ||||||||| | ||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
|
|
| T |
232658 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
232573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 535
Target Start/End: Original strand, 14584717 - 14584802
Alignment:
| Q |
451 |
gtccttttgaccgcatagttgcgccaat-tatgcattaagttcccatccgtaattccaaccttaaatagcatttgttttccaacaa |
535 |
Q |
| |
|
||||||||||| | ||| ||||||||| | ||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
|
|
| T |
14584717 |
gtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaa |
14584802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University