View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9396_high_3 (Length: 474)
Name: NF9396_high_3
Description: NF9396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9396_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 190 - 460
Target Start/End: Complemental strand, 24498806 - 24498536
Alignment:
| Q |
190 |
ataaaactcatacacaattgcgatgatttggacgagcaaaacctagaagtatccatacccatacacaattgcaaaatctctaattcaaatatgagcaaag |
289 |
Q |
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| T |
24498806 |
ataaaactcatacacaattgcgatgatttggacgagcgaaacctagaagtatccatacccatacacaattgcaaaatctctaattcaaatatgagcaaag |
24498707 |
T |
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| Q |
290 |
atacattaagttgtgcaatatctatattatcagttgaatcaaaccttacaagcgaaccatcatatgactcgtgcttgttccctttgatttattaatgaag |
389 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24498706 |
atacattaagctttgcaatatctatattatcagttgaatcaaaccttacaagcgaaccatcatatgactcgtgcttgttccctttgatttattaacgaag |
24498607 |
T |
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| Q |
390 |
gagcaaatatatttcgaaacttgatcgaaaatttgattccaattgctaacttgttgcattcatgtagttat |
460 |
Q |
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| T |
24498606 |
gagcaaatatattttgaaacttgatcgaaaatttgattccaattgctaacttgttgcattcatgtagttat |
24498536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 24499009 - 24498864
Alignment:
| Q |
11 |
cacagagtactttcacaaagcccacaatcaaaactcgccacgtataagatggagaacacgtaggtaggaccacgttatttaattggctgtttttggttta |
110 |
Q |
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| T |
24499009 |
cacagagtactttcacaaagcccacaatcaaaactcgccacgtataagatggagaacacgtaggtaggaccacgttatttaattggctgtttttggttta |
24498910 |
T |
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| Q |
111 |
atgagccagcttcacctaataaagactcttaacccacccttccttt |
156 |
Q |
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| T |
24498909 |
atgagccagcttcacccaataaagactcttaacccacccttccttt |
24498864 |
T |
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