View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9396_high_4 (Length: 455)

Name: NF9396_high_4
Description: NF9396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9396_high_4
NF9396_high_4
[»] chr2 (3 HSPs)
chr2 (19-450)||(8414977-8415408)
chr2 (19-172)||(8437336-8437487)
chr2 (182-242)||(31223002-31223062)
[»] scaffold0113 (1 HSPs)
scaffold0113 (176-303)||(21330-21456)
[»] chr4 (4 HSPs)
chr4 (178-271)||(12212084-12212177)
chr4 (180-295)||(22784112-22784226)
chr4 (220-253)||(23083851-23083884)
chr4 (178-267)||(33113024-33113113)
[»] chr3 (1 HSPs)
chr3 (207-295)||(32460158-32460245)
[»] scaffold0450 (1 HSPs)
scaffold0450 (200-278)||(12054-12132)
[»] chr6 (2 HSPs)
chr6 (200-256)||(23665609-23665665)
chr6 (218-278)||(25007144-25007204)
[»] chr1 (1 HSPs)
chr1 (221-290)||(2995632-2995700)
[»] chr5 (1 HSPs)
chr5 (220-256)||(27169827-27169863)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 8414977 - 8415408
Alignment:
Q  19 caattatgcttacacatgtccctcatcatttgtttccatgccttgcaaccaacgcaagatctgttatacatattaacttatgatgtctcgttcagttaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8414977 caattatgcttacacatgtccctcatcatttgtttccatgccttgcaaacaacgcaagatctgttatacatattaacttatgatgtctcgttcagttaat 8415076  T
Q  119 cggttcaatgacattaagatcatacatcgaatgtgagtgcaaattagccctatgccgagcaactagcattcacaaatgaaattattttagatcccgtaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8415077 cggttcaatgacattaagatcatacatcgaatgtgagtgcaaattagccctatgccgagcaactagcattcacaaatgaaattattttagatcccgtaaa 8415176  T
Q  219 taaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgcacttcagagaaaaacattaagaacaaaaataaaatagcgattattata 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  8415177 taaaaagtcgacgtctcgcactttctaaatcaaaatattatttttggattgcacgccagagaaaaacattaagaacaaaaataaaatagagattattata 8415276  T
Q  319 ttctatataactagccagatcaagtatctacatcagaaccataacaattagacctaatctcaataatagagaggattgaagaaaagagatttaatgttga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  8415277 ttctatataactagccagatcaagtatctacatcagaaccataacaattagacttaatctcaataatagagatgattgaagaaaagagatttaatgttga 8415376  T
Q  419 agttgattcctcaatctcctttgcctttgctt 450  Q
    |||||||||||| |||||||||||||| ||||    
T  8415377 agttgattcctccatctcctttgccttggctt 8415408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 8437336 - 8437487
Alignment:
Q  19 caattatgcttacacatgtccctcatcatttgtttccatgccttgcaaccaacgcaagatctgttatacatattaacttatgatgtctcgttcagttaat 118  Q
    ||||||||||| ||||||||| |||||||| ||||||||| |  ||||   |||  |||||  || ||| |||||| |  ||||||||||||||||||||    
T  8437336 caattatgcttccacatgtccatcatcattcgtttccatggcgggcaa---acgtgagatccattgtacctattaattattgatgtctcgttcagttaat 8437432  T
Q  119 cggttcaatgacattaagatcatacatcgaatgtgagtgcaaat-tagccctatg 172  Q
    | ||||||||| | |||||||| |||  | ||||| |||||||| ||||||||||    
T  8437433 cagttcaatgatagtaagatcagacagtgtatgtgtgtgcaaatctagccctatg 8437487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 31223002 - 31223062
Alignment:
Q  182 tagcattcacaaatgaaattattttagatcccgtaaataaaaagtcgatgtctcgcacttt 242  Q
    |||||| ||||| |||| ||||||||||||||  | |||||||||||||||||| ||||||    
T  31223002 tagcatccacaactgaatttattttagatccctgagataaaaagtcgatgtctcacacttt 31223062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 21330 - 21456
Alignment:
Q  176 agcaactagcattcacaaatgaaattattttagatcccgtaaataaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgcacttc 275  Q
    ||||||||| |||| ||||||||||||||| | ||| | || |||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||  ||    
T  21330 agcaactagaattctcaaatgaaattatttcaaatcgcttagataagaagtcaatgtcttgcactttctaaatcaaaatatcatttttggattgcatatc 21429  T
Q  276 agagaaaaacattaagaacaaaaataaa 303  Q
    | | |||| |||||||||||||||||||    
T  21430 a-aaaaaagcattaagaacaaaaataaa 21456  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 12212177 - 12212084
Alignment:
Q  178 caactagcattcacaaatgaaattattttagatcccgtaaataaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgca 271  Q
    |||||| ||| |||||||||| |||||| ||||||| | ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  12212177 caactaacatccacaaatgaatttatttcagatcccttcaataaaaagtcgatgactcacactttctaaatcaaaatatcatttttggattgca 12212084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 22784226 - 22784112
Alignment:
Q  180 actagcattcacaaatgaaattattttagatcccgtaaataaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgcacttcagag 279  Q
    |||||||| |||| ||||| |||||| |||| |   | || |||||| |||||||  |||||||||||||||||||| |||||  |||| ||| || |||    
T  22784226 actagcatacacagatgaacttatttcagattcttgatattaaaagttgatgtctaacactttctaaatcaaaatatcattttcagattacacgtc-gag 22784128  T
Q  280 aaaaacattaagaaca 295  Q
    |||| |||||||||||    
T  22784127 aaaagcattaagaaca 22784112  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 23083851 - 23083884
Alignment:
Q  220 aaaaagtcgatgtctcgcactttctaaatcaaaa 253  Q
    |||||||||||||||| |||||||||||||||||    
T  23083851 aaaaagtcgatgtctcacactttctaaatcaaaa 23083884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 33113024 - 33113113
Alignment:
Q  178 caactagcattcacaaatgaaattattttagatcccgtaaataaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggat 267  Q
    |||||| ||| ||| | |||| |||||| ||||||  || || |||| | ||||| || |||||||||||||||||||| ||||||||||    
T  33113024 caactaacatccactagtgaatttatttcagatcctttagattaaaatttgatgtgtcacactttctaaatcaaaatatcatttttggat 33113113  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 32460245 - 32460158
Alignment:
Q  207 agatcccgtaaataaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgcacttcagagaaaaacattaagaaca 295  Q
    ||||||| || ||||||||| ||||||| ||||||||||||||||||||| ||||| | ||||||  || || ||||||||||||||||    
T  32460245 agatcccttagataaaaagttgatgtcttgcactttctaaatcaaaatatcattttcgaattgcatgtcgga-aaaaacattaagaaca 32460158  T

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Target: scaffold0450 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 12054 - 12132
Alignment:
Q  200 ttattttagatcccgtaaataaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgcacttcaga 278  Q
    ||||| |||||||| || |||||||||||||||||| ||||||||| || ||||||| |  |||||| ||||| |||||    
T  12054 ttattatagatcccttagataaaaagtcgatgtctctcactttctacattaaaatatcaactttggagtgcacgtcaga 12132  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 23665665 - 23665609
Alignment:
Q  200 ttattttagatcccgtaaataaaaagtcgatgtctcgcactttctaaatcaaaatat 256  Q
    ||||| |||||||| || |||||||||||||||||| ||||||||| || |||||||    
T  23665665 ttattatagatcccttagataaaaagtcgatgtctctcactttctacattaaaatat 23665609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 25007204 - 25007144
Alignment:
Q  218 ataaaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgcacttcaga 278  Q
    |||||||||||||||||| |||||||||||| |||   | | ||||||||||||| |||||    
T  25007204 ataaaaagtcgatgtctcacactttctaaattaaatgttcaattttggattgcacgtcaga 25007144  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 2995700 - 2995632
Alignment:
Q  221 aaaagtcgatgtctcgcactttctaaatcaaaatattatttttggattgcacttcagagaaaaacattaa 290  Q
    |||||||||||||  ||||||  ||| ||||||||||||||||| ||||||| || || |||||||||||    
T  2995700 aaaagtcgatgtccagcacttcgtaagtcaaaatattatttttgaattgcacgtcgga-aaaaacattaa 2995632  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 27169827 - 27169863
Alignment:
Q  220 aaaaagtcgatgtctcgcactttctaaatcaaaatat 256  Q
    |||||||| |||||||||| |||||||||||||||||    
T  27169827 aaaaagtctatgtctcgcaatttctaaatcaaaatat 27169863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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