View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9396_high_6 (Length: 248)
Name: NF9396_high_6
Description: NF9396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9396_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 12640717 - 12640531
Alignment:
| Q |
32 |
cgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcaggagtggt |
131 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||| |||||||| |
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| T |
12640717 |
cgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggagagagatttggtaaagaaatgggcgttggagggagtggt |
12640618 |
T |
|
| Q |
132 |
gatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12640617 |
gatgatcgtgacttgttggccatgggatgcaaacaaagctgctatgtcacccaaaggaatcatatgaccaggtgctagaaatggaag |
12640531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 48963324 - 48963431
Alignment:
| Q |
124 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt |
223 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
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|
| T |
48963324 |
ggagtggtgatgattgtgacttgttggccacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaatgaagt |
48963423 |
T |
|
| Q |
224 |
aaagtttc |
231 |
Q |
| |
|
||||||| |
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|
| T |
48963424 |
gaagtttc |
48963431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 48959083 - 48959289
Alignment:
| Q |
25 |
gggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcag |
124 |
Q |
| |
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|||||||| ||||| |||||||| || | ||| ||||||||||||||| || ||||| || |||||||||||| ||||||| || | |||| | |
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| T |
48959083 |
gggaggccaacttgttgggagggaaagttgacaaggtgaaggcggaggaagaagggatcaacacttgagagagatttggtaaagaagtgggagttggagg |
48959182 |
T |
|
| Q |
125 |
gagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagta |
224 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||| | || |||||| |||| |
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|
| T |
48959183 |
gagtggtgatgattgtcacttgttggccatgggatgcaaacagagttgctatgtcacacatggggatcatatgcccaggtgctggatatggaatgaagtg |
48959282 |
T |
|
| Q |
225 |
aagtttc |
231 |
Q |
| |
|
||||||| |
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|
| T |
48959283 |
aagtttc |
48959289 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 48966271 - 48966477
Alignment:
| Q |
25 |
gggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcag |
124 |
Q |
| |
|
||||| || ||||| ||| |||||||||| |||||||||| ||||||||| | ||||| | ||||| ||||||||| || ||| | || || | | |
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|
| T |
48966271 |
gggagaccaacttgttggtaggggaaatcaacggtgtgaatgcggaggaagagaggatctatggagggaagagatttggaaaggaagttggcgttagagg |
48966370 |
T |
|
| Q |
125 |
gagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagta |
224 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||| | |||||||||||||| || ||| |||||||| || |||| |||| |||||| |||| |
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|
| T |
48966371 |
gagttgtgatgatggtgacttgttggccatgagatgcaaagatagttgctatgtcacacatagggatcatatggcctggtgctagatatggaatgaagtg |
48966470 |
T |
|
| Q |
225 |
aagtttc |
231 |
Q |
| |
|
||||||| |
|
|
| T |
48966471 |
aagtttc |
48966477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 13441142 - 13441334
Alignment:
| Q |
25 |
gggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcag |
124 |
Q |
| |
|
|||||| ||||||| |||||||| || ||||||||||| | ||||||||| || | | | |||| |||||||||||| | | | | ||||| |||| | |
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|
| T |
13441142 |
gggaggtcgacttgttgggagggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgagagagatttggttagggattgagcgttggagg |
13441241 |
T |
|
| Q |
125 |
gagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaa |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| | ||| |||||||| |||| || |||| |||||| |
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|
| T |
13441242 |
gagtggtgatgattgtgacttgttggccacgggatgcaaacatagttgctatgtcacaaagagggatcatatgtccagatgctagatatggaa |
13441334 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 13449305 - 13449511
Alignment:
| Q |
25 |
gggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcag |
124 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| || ||||| | ||| || |||| |||||||||||| ||| | | | || ||||| | |
|
|
| T |
13449305 |
gggaggccgacttgttgggaggggaagtcaacggtgtgaagacgaaggaatgaaggagcgtcggatgagagagatttggtaagggattttgcgttggcgg |
13449404 |
T |
|
| Q |
125 |
gagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagta |
224 |
Q |
| |
|
|||||||||||| || ||||| |||||| |||||||||||| ||||||||||||| | ||| |||||||| |||| || |||||||||| ||||| |
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|
| T |
13449405 |
gagtggtgatgactgttacttgctggccacgggatgcaaacatagttgctatgtcaaaaagagggatcatatgtccagatgcaagaaatggaatgaagta |
13449504 |
T |
|
| Q |
225 |
aagtttc |
231 |
Q |
| |
|
|| |||| |
|
|
| T |
13449505 |
aactttc |
13449511 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 13462329 - 13462518
Alignment:
| Q |
28 |
aggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcaggag |
127 |
Q |
| |
|
||||| ||||| ||||||||||| |||| |||||||| ||| |||| | ||| || |||| |||||||||||| ||| | | || | |||| |||| |
|
|
| T |
13462329 |
aggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgagagagatttggtaagggattggacgttggagggag |
13462428 |
T |
|
| Q |
128 |
tggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaa |
217 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||||| | ||||||||||| | ||| |||||||| |||| || |||| |||||| |
|
|
| T |
13462429 |
tggtgatgactgtgacgtgttggccacgggatgcaaacataattgctatgtcaaaaagagggatcatatgtccagatgctagatatggaa |
13462518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 12589331 - 12589225
Alignment:
| Q |
124 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt |
223 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||| | ||| |||||||| |||||||||||| |||||| |||| |
|
|
| T |
12589331 |
ggagtggtggtgattgtgacttgttggccacgggatgcaaacagggttgcaatgtcacatagagggatcatatgcccaggtgatagatatggaatgaagt |
12589232 |
T |
|
| Q |
224 |
aaagttt |
230 |
Q |
| |
|
|||||| |
|
|
| T |
12589231 |
gaagttt |
12589225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 12482605 - 12482492
Alignment:
| Q |
118 |
ttggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaa |
217 |
Q |
| |
|
|||| ||||||||||||||| ||||| || |||||| | ||||||||||||||||| || | | || ||| |||||||| ||||||| | ||||||||| |
|
|
| T |
12482605 |
ttggaaggagtggtgatgattgtgacatgatggccacgtgatgcaaacagagttgcaatcttgcacatagggatcatatgcccaggtgctggaaatggaa |
12482506 |
T |
|
| Q |
218 |
gcaagtaaagtttc |
231 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
12482505 |
tgaagtgaagtttc |
12482492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 12589415 - 12589370
Alignment:
| Q |
25 |
gggaggccgacttgctgggaggggaaatcgacggtgtgaaggcgga |
70 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
12589415 |
gggaggccgacttgtagggaggggaaatctacgatgtgaaggcgga |
12589370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 12541714 - 12541792
Alignment:
| Q |
124 |
ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccag |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| | ||| |||||||| |||| |
|
|
| T |
12541714 |
ggagtggtgatgattgtgacttgttggccatgtgatgcaaacaaagttgctatatcacaaagagggatcatatgtccag |
12541792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 28386360 - 28386426
Alignment:
| Q |
115 |
gcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcac |
181 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||| | |||||||||| ||||||||| |||| |
|
|
| T |
28386360 |
gcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcac |
28386426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 3416746 - 3416622
Alignment:
| Q |
52 |
tcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcaggagtggtgatgatcgtgacttgttggc |
151 |
Q |
| |
|
||||||||||||||||||||||| || ||| || | | || |||||||| ||| || | ||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
3416746 |
tcgacggtgtgaaggcggaggaagaagggagcggcataagaaagagattttgtaagaaatttggcattggagggagtggtgatgattgtgacatgttggc |
3416647 |
T |
|
| Q |
152 |
catgggatgcaaacagagttgctat |
176 |
Q |
| |
|
||||||||||||||| || |||||| |
|
|
| T |
3416646 |
catgggatgcaaacatagctgctat |
3416622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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