View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9396_low_13 (Length: 304)
Name: NF9396_low_13
Description: NF9396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9396_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 52988145 - 52987858
Alignment:
| Q |
1 |
cgagcacgttgaattagcctcgatgcatggttgttcaagtctggcagagaaagaaaaagattcttgtacagactgccccaaattgcctgttgtgtgtggt |
100 |
Q |
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| T |
52988145 |
cgagcacgttgaattagcctcgatgcatggttgttcaaatctggcagagaaagaaaaagattcttgtaaagactgccccaaattgcctgttgtgtgtggt |
52988046 |
T |
|
| Q |
101 |
ggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatcgaatcgtcaattatgcatgcttgcatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52988045 |
ggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatagaatcgtcaattatgcatgcttgcatta |
52987946 |
T |
|
| Q |
201 |
gttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatggacattcaggggctggtagttt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52987945 |
gttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatggacattcaggggctggtagttt |
52987858 |
T |
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