View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9396_low_14 (Length: 251)
Name: NF9396_low_14
Description: NF9396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9396_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 24242247 - 24242381
Alignment:
| Q |
75 |
tccttgtatatttcacatagtttcatgaagcactttttaatatcagtcccaacacaagtggtttggcttcttgnnnnnnnnnntatcagtctcaagaatt |
174 |
Q |
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| T |
24242247 |
tccttgtatatttcacatcgtttcatgaagcactttttaatattagtcccaacacaagtggtctggtttcttgaaaaaaataatatcagtctcaagtatt |
24242346 |
T |
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| Q |
175 |
tgaaacattgtacaattaacttgtttattgtgcaa |
209 |
Q |
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| T |
24242347 |
tgaaacattgtacaattaacttgtttattgtgcaa |
24242381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 24299954 - 24299820
Alignment:
| Q |
75 |
tccttgtatatttcacatagtttcatgaagcactttttaatatcagtcccaacacaagtggtttggcttcttgnnnnnnnnnntatcagtctcaagaatt |
174 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||| ||| |
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| T |
24299954 |
tccttgtatatttcacatcgtttcatgaagcactttttaatatcagacccaaaacaagtggtttggctacttgaaaaaaataatatcagtctcaagtatt |
24299855 |
T |
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| Q |
175 |
tgaaacattgtacaattaacttgtttattgtgcaa |
209 |
Q |
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| T |
24299854 |
tgaaacattgtacaattaacttgtttattgtgcaa |
24299820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 24242159 - 24242237
Alignment:
| Q |
14 |
catctacccttggttctggtgttcgtgcga-----cctaactctaagtacggtgtttattttggtttccttgtatattt |
87 |
Q |
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| T |
24242159 |
catctaccctcggttctggtgttcgtgcgaggagacctaactctaagtacggggtttattttggtttccttgtatattt |
24242237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 24299995 - 24299964
Alignment:
| Q |
56 |
tacggtgtttattttggtttccttgtatattt |
87 |
Q |
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| T |
24299995 |
tacggtgtttattttggtttccttgtatattt |
24299964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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