View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9396_low_3 (Length: 656)
Name: NF9396_low_3
Description: NF9396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9396_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 20 - 640
Target Start/End: Complemental strand, 39977240 - 39976625
Alignment:
| Q |
20 |
tgtcacaaacaattgtttgtgacattcatagagtcctattaaggtctcattcattttttccttatttcatgcttgttgcttttgaaggtggcagcatttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39977240 |
tgtcacaaacaattgtttgtgacattcatagagtcctattaaggtctcattcattttttccttatttcatgcttgttgcttttgaaggtggcagcatttt |
39977141 |
T |
|
| Q |
120 |
tagagcatttttcttgcttatgtcttgtcctttactcttgatttgtgatcatgagttaaaactaaagattatgacttttataaccttttgtggtttaaga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39977140 |
tagagcatttttcttgcttatgtcttgtcctttactcttgatttgtgatcatgagttaaaactaaagattatgacttttataaccttttgtggtttagga |
39977041 |
T |
|
| Q |
220 |
ataaaggacatggaaaatgtttcaagggctgttttaccaaagttttatttagagaatcttaatcttcaagtttatgagattcttgcttcagctgggtcta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39977040 |
ataaaggacatggaaaatgtttcaagggctgttttaccaaagttttatttagagaatcttaatcttcaagtttatgagattcttgcttcagctgggtcta |
39976941 |
T |
|
| Q |
320 |
aagttgttatcacaagtgtgcctagagttatggtagaaggatttttgaaagagtatttgagtgtcggtgatgttttaggcacagagttacacacttttgg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976940 |
aagttgttatcacaagtgtgcctagagttatggtagaaggatttttgaaagagtatttgagtgtcggtgatgttttaggcacagagttacacacttttgg |
39976841 |
T |
|
| Q |
420 |
ttgctacttcactggttttctcactagttctggcttacttgttaagcatagagcacttaaggagtattttggtgatagaaaacctgatattggaattgga |
519 |
Q |
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| T |
39976840 |
ttgctacttcactggttttctcactagttctggcttacttgttaagcatagagcacttaaggagtattttggtgatagaaaacctgatattggaattgga |
39976741 |
T |
|
| Q |
520 |
acttcaagtttacatcatcatcttttcatttccacttgcaaggtaagttttaaacaannnnnnnnnaaagggttggcaaattaaagatatctataaaaca |
619 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
39976740 |
acttcaagtttacatcatcatcttttcatatccacttgcaaggtaagttttaaacaatttttttttaaagggttggc-----aaagatatctataaaact |
39976646 |
T |
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| Q |
620 |
tttttgtgtattttctgatgt |
640 |
Q |
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||||||||||||||||||||| |
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| T |
39976645 |
tttttgtgtattttctgatgt |
39976625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 16193252 - 16193356
Alignment:
| Q |
21 |
gtcacaaacaattgtttgtgacattcatagagtcctattaaggtctcattcattttttccttatttcatgcttgttgcttttgaaggtggcagcattttt |
120 |
Q |
| |
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|||||||||| |||||||||| |||||||| ||||| |||| | |||||| || ||||||||||||||| | ||||| ||||||||||| |||||||| |
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| T |
16193252 |
gtcacaaacacttgtttgtgatattcatagtgtcctcttaaagactcattatttctttccttatttcatgttagttgcctttgaaggtggtagcatttta |
16193351 |
T |
|
| Q |
121 |
agagc |
125 |
Q |
| |
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||||| |
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| T |
16193352 |
agagc |
16193356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 437
Target Start/End: Original strand, 16193450 - 16193668
Alignment:
| Q |
219 |
aataaaggacatggaaaatgtttcaagggctgttttaccaaagttttatttagagaatcttaatcttcaagtttatgagattcttgcttcagctgggtct |
318 |
Q |
| |
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||| ||||||||||||| || |||||| ||||||||||||||||| | ||||| ||||| ||| ||| |||| || || | | |||| |||| | |
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| T |
16193450 |
aattaaggacatggaaatgattgcaagggtagttttaccaaagttttacatggagaaccttaaccttaaagcttatcaggttttggtctcagtagggtgt |
16193549 |
T |
|
| Q |
319 |
aaagttgttatcacaagtgtgcctagagttatggtagaaggatttttgaaagagtatttgagtgtcggtgatgttttaggcacagagttacacacttttg |
418 |
Q |
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| T |
16193550 |
agagttttcttcacttgtgtgcctagagttatggtggaagggtttcttaaggaatatttgaatggtgatgatattgttgccacagagttacacactgttg |
16193649 |
T |
|
| Q |
419 |
gttgctacttcactggttt |
437 |
Q |
| |
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| ||||||||||||||||| |
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| T |
16193650 |
gatgctacttcactggttt |
16193668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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