View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9397_high_1 (Length: 390)
Name: NF9397_high_1
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9397_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 47292821 - 47293177
Alignment:
| Q |
18 |
atcaagtacacacaaactgaaagaagagggtttcatatcaaacttactttgcgatgacgaggttattactagtttgattgagaggcttggggtgaaatcg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292821 |
atcaagtacacacaaactgaaagaagagggtttcatatcaaacttactttgcgatgacgaggttattactagtttgattgagaggcttggggtgaaatca |
47292920 |
T |
|
| Q |
118 |
ttgtgtatggttgatttcagaaaatactctcgagttagaaaatggactgttggaatatcaagaggtgaagaagtaatcgccgtcatccgagtctcaggga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292921 |
ttgtgtatggttgatttcagaaaatactctcgagttagaaaatggactgttggaatatcaagaggtgaagaagtaatcgccgtcatccgagtctcaggga |
47293020 |
T |
|
| Q |
218 |
ccatcgataggaaaatcattgcacgagagttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatcggaattgacagttc |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47293021 |
ccatcgataggaaaatcattgcacaagagttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatccgaattgacagttc |
47293120 |
T |
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| Q |
318 |
gggggcaatattgagtactctgattcaatgtggacagaaattaaatcaggtctcttg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47293121 |
gggggcaatattgagtactctgattcaatgtggacagaaattaaatcaggtctcttg |
47293177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 56209226 - 56209042
Alignment:
| Q |
131 |
atttcagaaaatactctcgagttagaaaatggactgttggaatatcaagaggtgaagaagtaatcgccgtcatccgagtctcagggaccatcgataggaa |
230 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||| ||| |||| |||| ||||||| |||| | ||| || |
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| T |
56209226 |
atttcagcaaatactctcgaattagaaaatggactgttggaatatcaaagggtaaagaactaatagccatcattcgagcctcagggtccataggtagtaa |
56209127 |
T |
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| Q |
231 |
aatcattgcacgag-agttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatcggaattgacagt |
315 |
Q |
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| T |
56209126 |
tatcattgca-gagaacttcattaagaagatccgtaaggtcagactgtcaaaaaaattcaaggctgttattatccgaattaacagt |
56209042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 45880100 - 45880013
Alignment:
| Q |
135 |
cagaaaatactctcgagttagaaaatggactgttggaatatcaagaggtgaagaagtaatcgccgtcatccgagtctcagggaccatc |
222 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| | ||| |||| | || || |||||||||| ||||||||||||| |
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| T |
45880100 |
cagaaaatactctggagttagaaaatggactgttggaatatcaggtggtaaagatctgatagctgtcatccgagcctcagggaccatc |
45880013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 45861661 - 45861574
Alignment:
| Q |
135 |
cagaaaatactctcgagttagaaaatggactgttggaatatcaagaggtgaagaagtaatcgccgtcatccgagtctcagggaccatc |
222 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||| || || |||||||||| ||| ||||||||| |
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| T |
45861661 |
cagaaaatactctggagttagaaaagagactgttggaatatcaagtggtaaagaacagatagctgtcatccgagcctcggggaccatc |
45861574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 7962493 - 7962197
Alignment:
| Q |
29 |
acaaactgaaagaagagggtttcatatcaaacttacttt---gcgatgacgaggttattactagtttgattgagaggcttggggtgaaatcgttgtgtat |
125 |
Q |
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||||||||||||||||||||||| |||||||| | || ||||| | |||||||||||||||||| | |||| ||||||||||||| ||| | | |
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| T |
7962493 |
acaaactgaaagaagagggtttcgtatcaaacatggttgacggcgatagcaaggttattactagtttgaataagagatttggggtgaaatcattgaattt |
7962394 |
T |
|
| Q |
126 |
ggttgatttcagaaaatactctcgagttagaaaatggactgttggaatatcaagaggtgaagaagtaatcgccgtcatccgagtctcagggaccatcgat |
225 |
Q |
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|||| ||| |||| ||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||||| || |
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| T |
7962393 |
ggtttattccagagaatactctctagttagaaaatggactgttggaatatcaaggagtaaagaagtaatcgccctcatccgactctcaaagaccattaat |
7962294 |
T |
|
| Q |
226 |
aggaaaatcattgcacgagagttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatcggaattgacagttcggggg |
322 |
Q |
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||||||||||||| || |||||||||| |||| |||||||||||| |||| |||| ||| | ||||||||||| |||| |||| ||||||| ||||| |
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| T |
7962293 |
aggaaaatcattggacaagagttcattgacaagatccgtgaagtcggtgactcaacaaaattcaaggctgttaatatccgaatcgacagtttggggg |
7962197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 7972685 - 7972579
Alignment:
| Q |
216 |
gaccatcgataggaaaatcattgcacgagagttcattaacaaaatccgtgaagtcagtgagtcaaaaaattgcaaggctgttattatcggaattgacagt |
315 |
Q |
| |
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||||||| |||||| |||||||| || ||| ||||||||||| |||||||||| | ||||||||||||| | |||||||||||||||| ||||||| ||| |
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| T |
7972685 |
gaccatcaataggagaatcattggacaagatttcattaacaagatccgtgaagccggtgagtcaaaaaaattcaaggctgttattatccgaattgatagt |
7972586 |
T |
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| Q |
316 |
tcggggg |
322 |
Q |
| |
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| T |
7972585 |
ttggggg |
7972579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 35854157 - 35854343
Alignment:
| Q |
31 |
aaactgaaagaagagggtttcatatcaaacttactttgcgatgacgaggttattactagtttgattgagaggcttggggtgaaatcgttgtgtatggttg |
130 |
Q |
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|||||||||||||||||||||||||||| |||| | | ||||| |||||||| ||| |||| |||||||||||||| ||||| | |||| || |
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| T |
35854157 |
aaactgaaagaagagggtttcatatcaagcttagtgtatgatgatgaggttataactctcttgaaggagaggcttggggttaaatcactccctatgattt |
35854256 |
T |
|
| Q |
131 |
atttcagaaaatactctcgagttagaaaatggactgttggaatatcaagagg-tgaagaagtaatcgccgtcatccgagtctcaggga |
217 |
Q |
| |
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||| |||||||||||| || |||||||||||||| | |||||| ||||| | ||||| ||| ||| |||||||||||||||||| |
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| T |
35854257 |
cttttagaaaatactctaaaggcagaaaatggactgtggcaatatc-agaggctaaagaacaaattgccatcatccgagtctcaggga |
35854343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 10520768 - 10520848
Alignment:
| Q |
138 |
aaaatactctcgagttagaaaatggactgttggaatatcaagaggtg-aagaagtaatcgccgtcatccgagtctcagggac |
218 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| ||||| | ||||| ||| ||| ||||||||||||||||||| |
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| T |
10520768 |
aaaatactctaaagttagaaaatggactgttggaatatc-agaggcgaaagaacaaatagccatcatccgagtctcagggac |
10520848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 35803049 - 35802958
Alignment:
| Q |
136 |
agaaaatactctcgagttagaaaatggactgttggaatatcaagagg-tgaagaagtaatcgccgtcatccgagtctcagggaccatcgatag |
227 |
Q |
| |
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|||||||||||| ||| |||||||||||||| |||||||| ||||| | ||||| ||| ||| ||||||||| ||||||||| || ||||| |
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| T |
35803049 |
agaaaatactctaaagtcagaaaatggactgtgggaatatc-agaggctaaagaacaaatagccatcatccgagcctcagggactatggatag |
35802958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 35803155 - 35803123
Alignment:
| Q |
31 |
aaactgaaagaagagggtttcatatcaaactta |
63 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
35803155 |
aaactgaaagaagagggtttcatatcaagctta |
35803123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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