View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9397_low_1 (Length: 480)
Name: NF9397_low_1
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9397_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 3098932 - 3099392
Alignment:
| Q |
1 |
cacacacactcaacatgtctctgcaatgctcaaagcaatgaactgagtaagacagagacatagacacacaaatagagtannnnnnnnnnnnnnnnnncca |
100 |
Q |
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| T |
3098932 |
cacactcactcaacatgtctctgcaatgctcaaagcaatgaactgagtaagacagagacatagacacacaaatagagtattttttactttttcttttcca |
3099031 |
T |
|
| Q |
101 |
cctcaaagaaagtaaacaaagtcatacatatcattatggtttctcgtacccacaaatcattttatatacccacacttgtcgaccaaacactaggaaaccg |
200 |
Q |
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| T |
3099032 |
cctcaaagaaagtaaacaaagtcatacatatcattatggtttctcgtacccacaaatcattttatatacccacacttgtcgaccaaacactaggaaaccg |
3099131 |
T |
|
| Q |
201 |
catcagtacctagttccaatgttaaatacaccattaataattcataaaatcttagtacagtgctaccttaatattttcaacaacaaaaaatacagtctta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3099132 |
catcagtacctagttccaatgttaaatacaccattaataattcataacatcttagtatagtgctaccttaatattttcaacaacaaaaaatacagtctta |
3099231 |
T |
|
| Q |
301 |
ccttagctcacatcttcttcttactatgttctaacttcannnnnnnccttctcattccaacccttgttactttgcttgctatattccaaggtatttgctt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3099232 |
ccttagctcacatcttcttcttactatgttctaacttcatttttttccttctcattccaa-ccttgttactttgcttgctatattccaaggtatttgctt |
3099330 |
T |
|
| Q |
401 |
tcattttcaagtgtcttttttatttgtacatatcacgacatgtttcaaaatcacgacgaacc |
462 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3099331 |
tcattttcaagtgtcttttttatttgtatatatcacgacatgtttcaaaatcacgacgaacc |
3099392 |
T |
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