View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9397_low_14 (Length: 226)
Name: NF9397_low_14
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9397_low_14 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 7889310 - 7889520
Alignment:
| Q |
16 |
cagaaacaattaaaaagattctccaaactaacctgtttgacaatataacaaattaagtaataattaaattacctggattttaagatgacaacccctgcta |
115 |
Q |
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| T |
7889310 |
cagaaacaattaaaaggattctccaaacttacctgtttgacaatataacaaattaagtaataattaaattacctggattttaagatgacaacccctgcta |
7889409 |
T |
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| Q |
116 |
tgccaccaacttcatggagtgctgctttccaatttctctttgtgtattcatccactgattttgtagatagaagacattcaaaagcttttccaaactctcc |
215 |
Q |
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| T |
7889410 |
tgctaccaacttcatggagtgctgctttccaatttctctttgtgtattcatccactgattttgtagatagaagacattcaaaagcttttccaaactctcc |
7889509 |
T |
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| Q |
216 |
tgtctgatgac |
226 |
Q |
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| T |
7889510 |
tgtctgatgac |
7889520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 10035054 - 10034970
Alignment:
| Q |
142 |
ttccaatttctctttgtgtattcatccactgattttgtagatagaagacattcaaaagcttttccaaactctcctgtctgatgac |
226 |
Q |
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| T |
10035054 |
ttccaattcctctttgtgtattcatccactgatattgttgatataagatattcaaaagcttctccaaactttcctgtctgatgac |
10034970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 6625600 - 6625679
Alignment:
| Q |
132 |
gagtgctgctttccaatttctctttgtgtattcatccactgattttgtagatagaagacattcaaaagcttttccaaact |
211 |
Q |
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| T |
6625600 |
gagtgctcttttccaattactctttgtggattcatccactgagattgttggtataagtttttcaaaagcttttccaaact |
6625679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 6648406 - 6648336
Alignment:
| Q |
141 |
tttccaatttctctttgtgtattcatccactgattttgtagatagaagacattcaaaagcttttccaaact |
211 |
Q |
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| T |
6648406 |
tttccaattactctttgtggattcatccactgagattgttgagataagatcttcaaaagattttccaaact |
6648336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 18925868 - 18925781
Alignment:
| Q |
83 |
attacctggattttaagatgacaacccctgctatgccaccaacttcatggagtgctgctttccaatttctctttgtgtattcatccac |
170 |
Q |
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| T |
18925868 |
attacctggaatttagaatgacaacccctgctgtactaccaacttcaaggagcgctgttttccaattcatcttcgtatatttatccac |
18925781 |
T |
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