View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9397_low_16 (Length: 210)

Name: NF9397_low_16
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9397_low_16
NF9397_low_16
[»] chr1 (3 HSPs)
chr1 (96-201)||(35583263-35583368)
chr1 (135-183)||(1815306-1815354)
chr1 (135-182)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (135-182)||(16766757-16766804)
[»] chr5 (1 HSPs)
chr5 (135-182)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (135-182)||(40993298-40993345)
[»] chr2 (1 HSPs)
chr2 (135-182)||(2438682-2438729)
[»] chr7 (2 HSPs)
chr7 (135-168)||(7197274-7197307)
chr7 (138-182)||(8234198-8234242)
[»] scaffold0053 (1 HSPs)
scaffold0053 (135-183)||(8847-8895)
[»] chr4 (1 HSPs)
chr4 (135-183)||(34306766-34306814)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 35583368 - 35583263
Alignment:
Q  96 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||     
T  35583368 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgcccgacactgtgtcacgcctaatctatagaatgtctg 35583269  T
Q  196 tgcttc 201  Q
    ||||||    
T  35583268 tgcttc 35583263  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 1815306 - 1815354
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 183  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  1815306 tgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatct 1815354  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 43492504 - 43492457
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 182  Q
    |||||||||| |||||||||||||||||||||||   |||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 16766757 - 16766804
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 182  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||    
T  16766757 tgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatc 16766804  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 7677765 - 7677812
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 182  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||    
T  7677765 tgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 40993345 - 40993298
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 182  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  40993345 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 40993298  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 2438729 - 2438682
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 182  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2438729 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 2438682  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 7197307 - 7197274
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccg 168  Q
    |||||||||| |||||||||||||||||||||||    
T  7197307 tgtcggtgtcggacacaacacatgtccgacaccg 7197274  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 8234198 - 8234242
Alignment:
Q  138 cggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 182  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 183  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  135 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 183  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

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