View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9397_low_2 (Length: 473)
Name: NF9397_low_2
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9397_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 29548591 - 29549047
Alignment:
| Q |
15 |
aaaaaataatttagcaaaaatgacatctcattttctgctcttatttaattcatgtccatttaataaaattgtatttaaacaaacaatctttagatgaatt |
114 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29548591 |
aaaaaataatttagcaaaaatgacatcccattttctgctcttatttagttcatgtccatttaaaaaaattgtatttaaacaaacaatctttagatgaatt |
29548690 |
T |
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| Q |
115 |
ctgtgtagaatacacaatctatcaaagtatgactatgaagaatggtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggtt |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29548691 |
ctgtgtagaataaacaatctatcaaagtatgactatgaagagtggtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggtt |
29548790 |
T |
|
| Q |
215 |
gtcaagtttcttctccaacgtcgttatactgttagagccactgttcgtgaccctagtcagtgcttctttctccttgtctaaattttaatttgttacatta |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29548791 |
gtcaagtttcttctccaacgtggttatactgttagagccactgttcgtgaccctagtcagtgcttctttctccttgtctaaattttaatttgtttcatta |
29548890 |
T |
|
| Q |
315 |
atttcttggtgttttatattcattttgaatgagtgannnnnnnnncatatctataggtaattccaataaggttgatcacttgcttaaacttgatggtgca |
414 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29548891 |
attttttggtgttttatattcattttgaatgagtgatttttttttcatatctataggtaattccaataaggttgatcacttgcttaaacttgatggtgca |
29548990 |
T |
|
| Q |
415 |
aaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttgcttct |
471 |
Q |
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| T |
29548991 |
aaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattct |
29549047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 29554902 - 29555007
Alignment:
| Q |
159 |
gtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtcgttatactgttagagccactgt |
258 |
Q |
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||||||| ||||| || |||||||| ||||||||||||| |||||||||||| ||||||| ||||| || |||||| |||| ||||||||||||||||| |
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| T |
29554902 |
gtgaaggaaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgt |
29555001 |
T |
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| Q |
259 |
tcgtga |
264 |
Q |
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|||||| |
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| T |
29555002 |
tcgtga |
29555007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 361 - 466
Target Start/End: Original strand, 29555146 - 29555251
Alignment:
| Q |
361 |
atatctataggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggtt |
460 |
Q |
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| T |
29555146 |
atatgtataggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggtt |
29555245 |
T |
|
| Q |
461 |
cctttg |
466 |
Q |
| |
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| |||| |
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|
| T |
29555246 |
catttg |
29555251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 29559119 - 29559194
Alignment:
| Q |
160 |
tgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgt |
235 |
Q |
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| T |
29559119 |
tgaaggaaaggttgtgtgtgtaacaggtggttcaggttatattgcttcatggcttgttaagtttcttctccaacgt |
29559194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 369 - 466
Target Start/End: Original strand, 26100937 - 26101034
Alignment:
| Q |
369 |
aggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttg |
466 |
Q |
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||||||| | || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
26100937 |
aggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcctttg |
26101034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 369 - 466
Target Start/End: Original strand, 25933418 - 25933515
Alignment:
| Q |
369 |
aggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttg |
466 |
Q |
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||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| |||| |
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| T |
25933418 |
aggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttg |
25933515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 25933213 - 25933329
Alignment:
| Q |
173 |
gtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtcgttatactgttagagccactgttcgtgaccctagtc |
272 |
Q |
| |
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|||||||| ||||||||| ||||| |||||||||||| |||| |||||||| || ||| || |||| ||||| ||||| ||||||||| |||| |||| |
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| T |
25933213 |
gtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctccttcaatgtggttacactgtcagagcaactgttcgtcacccaagtc |
25933312 |
T |
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| Q |
273 |
agtgcttctttctcctt |
289 |
Q |
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||||||||||||||||| |
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| T |
25933313 |
agtgcttctttctcctt |
25933329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 26100708 - 26100814
Alignment:
| Q |
161 |
gaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtcgttatactgttagagccactgttc |
260 |
Q |
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||||| ||||| |||||||| ||||||||||| ||||| || ||||||||| |||||||||| || ||||||||| |||| ||||| |||||||||| | |
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| T |
26100708 |
gaaggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaacgtggttacactgtccgagccactgtcc |
26100807 |
T |
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| Q |
261 |
gtgaccc |
267 |
Q |
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||||||| |
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| T |
26100808 |
gtgaccc |
26100814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 87800 - 87894
Alignment:
| Q |
377 |
ccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttactagaagaaggttcctttgcttct |
471 |
Q |
| |
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|||| |||||||| |||||| |||| ||||||||||| ||||| || |||||||| || |||||| || |||| ||||||||| |||||| |||| |
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| T |
87800 |
ccaagaaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattct |
87894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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