View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9397_low_3 (Length: 455)

Name: NF9397_low_3
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9397_low_3
NF9397_low_3
[»] chr7 (23 HSPs)
chr7 (94-327)||(4886976-4887208)
chr7 (327-421)||(4886848-4886942)
chr7 (330-428)||(41331048-41331148)
chr7 (329-434)||(40518857-40518964)
chr7 (327-432)||(23274780-23274887)
chr7 (321-432)||(36931970-36932083)
chr7 (326-428)||(45284784-45284888)
chr7 (16-53)||(4887225-4887262)
chr7 (346-431)||(35950126-35950213)
chr7 (327-432)||(41853994-41854101)
chr7 (346-431)||(42443687-42443774)
chr7 (327-396)||(7836902-7836972)
chr7 (332-429)||(44831593-44831691)
chr7 (16-53)||(4918205-4918242)
chr7 (16-53)||(4930063-4930100)
chr7 (346-429)||(36391889-36391974)
chr7 (345-397)||(37411721-37411774)
chr7 (327-426)||(38151347-38151448)
chr7 (349-390)||(41853680-41853721)
chr7 (345-397)||(47440794-47440847)
chr7 (330-397)||(25155574-25155642)
chr7 (327-421)||(47542943-47543038)
chr7 (327-367)||(49089564-49089604)
[»] chr5 (12 HSPs)
chr5 (327-420)||(41083504-41083598)
chr5 (327-433)||(20145530-20145638)
chr5 (329-432)||(4067979-4068084)
chr5 (346-429)||(43580878-43580963)
chr5 (345-413)||(28758401-28758472)
chr5 (345-431)||(41179787-41179875)
chr5 (332-433)||(3198323-3198426)
chr5 (327-397)||(8571826-8571897)
chr5 (346-431)||(11897246-11897333)
chr5 (346-431)||(21749363-21749449)
chr5 (345-397)||(33018510-33018562)
chr5 (346-390)||(37182583-37182627)
[»] chr3 (17 HSPs)
chr3 (327-432)||(24303387-24303494)
chr3 (327-420)||(4227710-4227805)
chr3 (346-432)||(49983693-49983781)
chr3 (346-431)||(28689657-28689744)
chr3 (329-397)||(19222554-19222623)
chr3 (345-432)||(25883972-25884062)
chr3 (345-397)||(43280101-43280154)
chr3 (326-397)||(26880210-26880282)
chr3 (326-397)||(54408515-54408587)
chr3 (346-431)||(10482838-10482925)
chr3 (346-431)||(52945893-52945979)
chr3 (345-432)||(14795108-14795197)
chr3 (326-397)||(15005974-15006047)
chr3 (345-420)||(38949683-38949760)
chr3 (345-432)||(46844955-46845044)
chr3 (326-397)||(29531247-29531319)
chr3 (327-432)||(44764719-44764824)
[»] chr2 (15 HSPs)
chr2 (327-432)||(20919607-20919714)
chr2 (329-421)||(3596258-3596352)
chr2 (345-433)||(11949980-11950070)
chr2 (344-432)||(4858685-4858774)
chr2 (356-432)||(23405193-23405271)
chr2 (345-413)||(44558019-44558088)
chr2 (330-432)||(1964350-1964454)
chr2 (332-433)||(13242702-13242805)
chr2 (346-431)||(17034733-17034820)
chr2 (346-431)||(22653629-22653716)
chr2 (345-426)||(23919461-23919544)
chr2 (345-433)||(2145719-2145809)
chr2 (348-431)||(11050744-11050829)
chr2 (346-390)||(17089283-17089328)
chr2 (345-431)||(3446728-3446816)
[»] chr1 (25 HSPs)
chr1 (327-428)||(11333665-11333768)
chr1 (327-428)||(11491686-11491789)
chr1 (327-430)||(36666542-36666647)
chr1 (327-432)||(31124604-31124711)
chr1 (326-397)||(45416143-45416215)
chr1 (326-432)||(47469038-47469146)
chr1 (327-397)||(23991230-23991301)
chr1 (345-432)||(8741470-8741559)
chr1 (345-428)||(43021606-43021691)
chr1 (346-431)||(6130018-6130105)
chr1 (327-432)||(19564119-19564225)
chr1 (346-431)||(32594249-32594336)
chr1 (346-431)||(42490395-42490482)
chr1 (345-424)||(45180506-45180585)
chr1 (327-397)||(50119005-50119076)
chr1 (332-432)||(11860039-11860141)
chr1 (345-432)||(29204642-29204731)
chr1 (345-405)||(49503134-49503195)
chr1 (346-390)||(3694901-3694945)
chr1 (346-390)||(8984491-8984535)
chr1 (330-432)||(18607778-18607882)
chr1 (327-433)||(30245990-30246098)
chr1 (327-394)||(34557289-34557357)
chr1 (326-393)||(39670794-39670862)
chr1 (343-390)||(50537004-50537052)
[»] chr4 (14 HSPs)
chr4 (327-430)||(51890796-51890901)
chr4 (329-426)||(29406360-29406459)
chr4 (327-397)||(2629612-2629683)
chr4 (327-432)||(32293105-32293212)
chr4 (345-397)||(13088942-13088995)
chr4 (326-394)||(38848085-38848154)
chr4 (327-397)||(12625862-12625933)
chr4 (327-432)||(23924838-23924945)
chr4 (327-397)||(42664014-42664085)
chr4 (330-396)||(46791177-46791244)
chr4 (345-429)||(45139865-45139951)
chr4 (345-397)||(11294822-11294875)
chr4 (327-430)||(42002305-42002410)
chr4 (346-429)||(43978008-43978092)
[»] chr8 (16 HSPs)
chr8 (332-433)||(481007-481110)
chr8 (327-432)||(12770365-12770472)
chr8 (346-431)||(17027866-17027952)
chr8 (346-431)||(17558302-17558388)
chr8 (347-432)||(42877031-42877117)
chr8 (326-433)||(30676269-30676378)
chr8 (326-431)||(14876566-14876674)
chr8 (346-431)||(17698520-17698607)
chr8 (327-397)||(25824868-25824939)
chr8 (327-397)||(43846968-43847039)
chr8 (346-426)||(25890389-25890471)
chr8 (346-426)||(27077082-27077164)
chr8 (345-432)||(13059161-13059250)
chr8 (369-429)||(24517295-24517356)
chr8 (327-433)||(11231416-11231524)
chr8 (327-390)||(22274577-22274641)
[»] chr6 (10 HSPs)
chr6 (327-397)||(32620037-32620108)
chr6 (369-432)||(20568294-20568358)
chr6 (346-431)||(15091446-15091533)
chr6 (360-429)||(16801786-16801857)
chr6 (327-431)||(24319011-24319117)
chr6 (327-396)||(32788820-32788890)
chr6 (327-403)||(8443566-8443643)
chr6 (327-403)||(8452370-8452447)
chr6 (372-428)||(23610331-23610388)
chr6 (369-432)||(34268279-34268343)
[»] scaffold0257 (1 HSPs)
scaffold0257 (327-432)||(21791-21898)
[»] scaffold0154 (1 HSPs)
scaffold0154 (329-421)||(28789-28883)
[»] scaffold0250 (1 HSPs)
scaffold0250 (327-428)||(15006-15109)
[»] scaffold0519 (1 HSPs)
scaffold0519 (327-433)||(2928-3036)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 94 - 327
Target Start/End: Complemental strand, 4887208 - 4886976
Alignment:
Q  94 catataaaagttttgccactacaattagtgggtcacgaaggttttcaattgtaaatgacacaactgactgactcaatcgttatcattattttgtcacctg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  4887208 catataaaagttttgccactacaattagtgggtcacgaaggttttcaattgtaaatgacaca-ctgactgactcaatcgttatgattattttgtcacctg 4887110  T
Q  194 caaaaaagttataataaggtaagctttgattaaacctgacatggacactttgattaagatttgaatattgaacaaccatattttccacatgacaactagt 293  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  4887109 caaaaaagttctaataaggtaagctttgattaaacctgacatggtcactttgattaagatttgaatattgaacaagcatattttccacatgacaactact 4887010  T
Q  294 cggatgtacataataaataagcctacactagttt 327  Q
    | ||||||||||||||||||||||||||||||||    
T  4887009 cagatgtacataataaataagcctacactagttt 4886976  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 4886942 - 4886848
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtcctaccaacttagctaag 421  Q
    ||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  4886942 tagagttcacacaattatatgtggagaagtggggtgtccggattcgaaccccgacccttgcataaattatgccatgtcctaccaactaagctaag 4886848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 41331048 - 41331148
Alignment:
Q  330 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacg 427  Q
    |||||||| ||| | |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||  |||| ||| |||||| ||||||| |||||    
T  41331048 agctcacacaattaaatgtggagaagtggggtgtccggaattcgaaccccgacccctgcataaattatgcaatgtccctgccaactgagctaagctcacg 41331147  T
Q  428 g 428  Q
    |    
T  41331148 g 41331148  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 434
Target Start/End: Original strand, 40518857 - 40518964
Alignment:
Q  329 gagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcac 426  Q
    ||||||||| ||| | |||||||||| ||||||||||||| |||||| ||| || ||| |||| ||||||  |||||| |||||||| ||||||||||||    
T  40518857 gagctcacacaattaaatgtggagaagtggggtgtccggagttcgaatcccaacccctacatatattatgcaatgtccctaccaactgagctaagttcac 40518956  T
Q  427 ggggacgc 434  Q
    ||||||||    
T  40518957 ggggacgc 40518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 23274780 - 23274887
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 424  Q
    ||||||||||| ||| |  |||||| || ||||||||||||  ||||||| ||| | |||||||||||||||  |||||| |||||||||||||||| ||    
T  23274780 tagagctcacacaattaattgtggaaaaatggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaacttagctaagctc 23274879  T
Q  425 acggggac 432  Q
    ||||||||    
T  23274880 acggggac 23274887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 432
Target Start/End: Complemental strand, 36932083 - 36931970
Alignment:
Q  321 ctagtttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagct 418  Q
    ||||| ||||||||||| ||| | |||| ||||| |||||||||| || |||||||||||   |||||||||||||||  |||| ||| |||||| ||||    
T  36932083 ctagtatagagctcacacaattaaatgtagagaagtggggtgtccggggttcgaaccccggaccctgcataaattatgcaatgtccctgccaactgagct 36931984  T
Q  419 aagttcacggggac 432  Q
    |||||||| |||||    
T  36931983 aagttcacagggac 36931970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 45284784 - 45284888
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagtt 423  Q
    |||||||||||| ||| | |||| ||||| ||||||||||||  ||||||||||||| ||||||||||||||   |||| |||| ||||| ||||||| |    
T  45284784 ttagagctcacacaattaaatgttgagaagtggggtgtccggggttcgaaccccgacccctgcataaattattcaatgtccctatcaactgagctaagct 45284883  T
Q  424 cacgg 428  Q
    |||||    
T  45284884 cacgg 45284888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4887262 - 4887225
Alignment:
Q  16 ctcaccaccttcatcctgctttctatcagcatctctta 53  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4887262 ctcaccaccttcatcctgctttctatcagcttctctta 4887225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 35950213 - 35950126
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  35950213 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 35950126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 41854101 - 41853994
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | ||||||||||  ||||||||| || || |||| ||| | |||||||||||||||  |||| ||| |||||| ||||||| ||    
T  41854101 tagagctcacataattaaatgtggagaagcggggtgtccggggtttgaactccgtcccctgcataaattatgcaatgtccctgccaactgagctaagctc 41854002  T
Q  425 acggggac 432  Q
    ||||||||    
T  41854001 acggggac 41853994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 42443774 - 42443687
Alignment:
Q  346 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  42443774 tgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 42443687  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 7836902 - 7836972
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattat 396  Q
    ||||||||||| ||| | |||||||||| ||| |||| |||| ||||||||||||  ||||||||||||||    
T  7836902 tagagctcacacaattaaatgtggagaagtggtgtgttcggagttcgaaccccgatccctgcataaattat 7836972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 429
Target Start/End: Original strand, 44831593 - 44831691
Alignment:
Q  332 ctcacaaaatcatatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 429  Q
    |||||| ||| | |||||||||| |||||||||    ||||||| | ||| |||||||||||||||  |||||| |||||||| | |||||||||||||    
T  44831593 ctcacataattaaatgtggagaagtggggtgtctatgttcgaactctgacccctgcataaattatgcaatgtccctaccaactgatctaagttcacggg 44831691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 4918205 - 4918242
Alignment:
Q  16 ctcaccaccttcatcctgctttctatcagcatctctta 53  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  4918205 ctcaccaccttcatcctgctttctctcagcatccctta 4918242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 4930063 - 4930100
Alignment:
Q  16 ctcaccaccttcatcctgctttctatcagcatctctta 53  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  4930063 ctcaccaccttcatcctgctttctctcagcatccctta 4930100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 36391889 - 36391974
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggg 429  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||    
T  36391889 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacggg 36391974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 37411721 - 37411774
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    |||||||||| ||||||||||||| ||| ||| ||||| |||||||||||||||    
T  37411721 atgtggagaagtggggtgtccggagttcaaactccgacccctgcataaattatg 37411774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 38151448 - 38151347
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||||| |  | ||||||||||||| ||||||||||| |||  || | |||||||||| ||||||| ||    
T  38151448 tagagctcacacaattaaatgtggagaagtggggtgttcatggttcgaaccccgacccctgcataaataatgcaatatccctaccaactgagctaagctc 38151349  T
Q  425 ac 426  Q
    ||    
T  38151348 ac 38151347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 41853721 - 41853680
Alignment:
Q  349 ggagaactggggtgtccggattcgaaccccgactcctgcata 390  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  41853721 ggagaagtggggtgtccgggttcgaaccccgactcttgcata 41853680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 47440794 - 47440847
Alignment:
Q  345 atgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    |||||||||| |||||||||| || ||||||||||||| |||||||| ||||||    
T  47440794 atgtggagaagtggggtgtccagggttcgaaccccgacccctgcatatattatg 47440847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 25155642 - 25155574
Alignment:
Q  330 agctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    |||||||| ||| | |||||||||| |||||||||| || ||||||||||||  |||||||||| ||||    
T  25155642 agctcacacaattaaatgtggagaagtggggtgtccagggttcgaaccccgaaccctgcataaaatatg 25155574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 47542943 - 47543038
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatg-tcctaccaacttagctaag 421  Q
    ||||||||||||||| | || ||||||| |||| ||||||| |||||||||| | | |||||||||||||||  |||  |||||||||| |||||||    
T  47542943 tagagctcacaaaattaaatatggagaagtggg-tgtccgggattcgaaccctggcccctgcataaattatgcaatgcccctaccaactgagctaag 47543038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 49089604 - 49089564
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgg 367  Q
    ||||||||||| ||| |||||||||||| ||||||||||||    
T  49089604 tagagctcacacaattatatgtggagaagtggggtgtccgg 49089564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 41083504 - 41083598
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaa 420  Q
    |||||||| |||||| | | |||||||| |||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||| ||||||    
T  41083504 tagagctcccaaaattaaacgtggagaagtggggtgtccggattcgaaccccgacccctgcataaattatgcaatgtctctaccaactgagctaa 41083598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 433
Target Start/End: Original strand, 20145530 - 20145638
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| ||||||||||| | ||||||||||| | | |||||||||||||  || | |||||||||| ||||||||||    
T  20145530 tagagctcacacaattaaatgtggagaagtggggtgtccgaggttcgaaccccggcccttgcataaattatgcaatatccctaccaactaagctaagttc 20145629  T
Q  425 acggggacg 433  Q
    | |||||||    
T  20145630 atggggacg 20145638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 432
Target Start/End: Complemental strand, 4068084 - 4067979
Alignment:
Q  329 gagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 426  Q
    ||||||||| ||| | |||||||||| |||||||||| || |||||||| || | |||||||||| ||||   ||| |||||||||| ||||||| ||||    
T  4068084 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcgccccctgcataaaatatgcattgtccctaccaactgagctaagctcac 4067985  T
Q  427 ggggac 432  Q
    ||||||    
T  4067984 ggggac 4067979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 43580963 - 43580878
Alignment:
Q  346 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 429  Q
    ||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || ||| |||||||| |||||||||||||||    
T  43580963 tgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagttcacggg 43580878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 413
Target Start/End: Original strand, 28758401 - 28758472
Alignment:
Q  345 atgtggagaactggggtgtccgga--ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaact 413  Q
    |||||||||| || ||||||||||  || ||||||||||||||||||||||||||  |||| ||||||||||    
T  28758401 atgtggagaagtgaggtgtccggaggtttgaaccccgactcctgcataaattatgcaatgtccctaccaact 28758472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 431
Target Start/End: Original strand, 41179787 - 41179875
Alignment:
Q  345 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    |||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  41179787 atgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 41179875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 433
Target Start/End: Complemental strand, 3198426 - 3198323
Alignment:
Q  332 ctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 429  Q
    |||||| ||| | |||||||||| | ||||||||||  |||||||| | || |||||||| ||||||  |||||| |||||||| ||||||| |||||||    
T  3198426 ctcacataattaaatgtggagaagtagggtgtccggggttcgaacctcaacccctgcatatattatgcaatgtccctaccaactgagctaagctcacggg 3198327  T
Q  430 gacg 433  Q
    ||||    
T  3198326 gacg 3198323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 8571897 - 8571826
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    ||||||||||| ||| | |||||||||| | |||||| |||  ||||||||||||| |||||||||||||||    
T  8571897 tagagctcacacaattaaatgtggagaagtagggtgttcggggttcgaaccccgacccctgcataaattatg 8571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 11897333 - 11897246
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  11897333 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 11897246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 21749363 - 21749449
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| |||||||| ||||||| |||||||||||||| | ||||   | | |||||||||| ||||||| |||||||||    
T  21749363 tgtggagaagtggagtgtccgggttcgaacaccgactcctgcatataatatgcagtatccctaccaactgagctaagctcacgggga 21749449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 33018510 - 33018562
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||||||||||||    
T  33018510 atgtggagaagtggggtgtccgaagttcgaaccccgac-cctgcataaattatg 33018562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 37182627 - 37182583
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcata 390  Q
    ||||||||| ||| ||||| || ||||||||||||||||||||||    
T  37182627 tgtggagaagtggagtgtcgggtttcgaaccccgactcctgcata 37182583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 24303494 - 24303387
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| ||| |||||| ||||||| ||    
T  24303494 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagctc 24303395  T
Q  425 acggggac 432  Q
    ||||||||    
T  24303394 acggggac 24303387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 4227710 - 4227805
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaa 420  Q
    ||||||||||| ||| |  | ||||||| ||||||||||||| ||||||||||||| |||||||||||||||  |||| |||||||||| ||||||    
T  4227710 tagagctcacacaattaattatggagaagtggggtgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaactgagctaa 4227805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 49983693 - 49983781
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggggac 432  Q
    ||||||||| | ||||||||||  |||||||||| || ||||||||||||||   |||||| |||||||| ||||||||||||||||||    
T  49983693 tgtggagaagtagggtgtccggggttcgaaccccaacccctgcataaattatacaatgtccctaccaactgagctaagttcacggggac 49983781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 28689657 - 28689744
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || ||| |||||||| |||||||||||||||||    
T  28689657 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagttcacgggga 28689744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 19222554 - 19222623
Alignment:
Q  329 gagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    ||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||    
T  19222554 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatg 19222623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 25883972 - 25884062
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt---cctaccaacttagctaagttcacggggac 432  Q
    |||||||||| ||||||||||||  ||||||||||||| |||||||| |||||| ||| |   |||||||||| ||||||| ||||||||||    
T  25883972 atgtggagaagtggggtgtccggggttcgaaccccgacccctgcatatattatg-catttgtccctaccaactaagctaagctcacggggac 25884062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 43280154 - 43280101
Alignment:
Q  345 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatg 397  Q
    |||||||||| |||||||||||| |||||||||||| | |||||||||||||||    
T  43280154 atgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatg 43280101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 26880282 - 26880210
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    |||||||||||| | | | |||||||||| ||||||||| | | ||||||||||||| |||||||||||||||    
T  26880282 ttagagctcacacatttaaatgtggagaagtggggtgtctgaagttcgaaccccgacccctgcataaattatg 26880210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 54408515 - 54408587
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    |||||||||||| ||| | ||||||| || |||||||||| || |||||||||||||  ||||||||||||||    
T  54408515 ttagagctcacataattaaatgtggaaaaatggggtgtccggggttcgaaccccgacctctgcataaattatg 54408587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 10482838 - 10482925
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| ||||||||| ||||||||||  |||||||||| | ||||  || ||| |||||||| |||||||||||||||||    
T  10482838 tgtggagaagtggagtgtccggagttcgaaccccagctcctgcatataatatgcaatatccctaccaactgagctaagttcacgggga 10482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 52945979 - 52945893
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| |||| ||| ||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  52945979 tgtggagaagtggagtgtacgggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 52945893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 14795197 - 14795108
Alignment:
Q  345 atgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagttcacggggac 432  Q
    |||||||||| |||||||||| || || |||||| | | |||||||| ||||||  ||||| ||||||||| ||||||| ||||||||||    
T  14795197 atgtggagaagtggggtgtccggggtttgaaccctggcacctgcatatattatgcaatgtcactaccaactaagctaagctcacggggac 14795108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 15006047 - 15005974
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactgggg-tgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    |||||||||||  ||| | |||||||||| || || |||||||| ||||||||||| |||||||||||||||||    
T  15006047 ttagagctcactcaattaaatgtggagaagtgtggatgtccggagttcgaaccccggctcctgcataaattatg 15005974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 38949760 - 38949683
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaa 420  Q
    |||||||||| |||||||| |||  ||||||||||| | |||||||||||||||  |||| |||||||||| ||||||    
T  38949760 atgtggagaagtggggtgttcggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaa 38949683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 46844955 - 46845044
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    |||||||||| | ||||||||||  ||||||| ||||| |||||||||||||||  |||| ||| |||| | ||||||| ||||||||||    
T  46844955 atgtggagaagtagggtgtccggggttcgaactccgacccctgcataaattatgcaatgtccctgccaattgagctaagctcacggggac 46845044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 29531319 - 29531247
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggt-gtccggattcgaaccccgactcctgcataaattatg 397  Q
    |||||||||||| ||| | |||||||||| || ||| ||||||  |||||||||||| ||| |||||||||||    
T  29531319 ttagagctcacacaattaaatgtggagaagtgaggttgtccggggtcgaaccccgaccccttcataaattatg 29531247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 44764824 - 44764719
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| ||| |||||| || |||||||||   | |||||||||||||||  |||| |||||||||| ||||||| ||    
T  44764824 tagagctcacacaattaaatgtggagaagtggagtgtccggggttcgaaccc--gcccctgcataaattatgcaatgtccctaccaactgagctaagctc 44764727  T
Q  425 acggggac 432  Q
    ||| ||||    
T  44764726 acgaggac 44764719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 20919714 - 20919607
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | || ||||||||||||  |||| |||||||||| ||||||| ||    
T  20919714 tagagctcacataattaaatgtggagaagtggggtgtccggggttcgaaccccggccccagcataaattatgcaatgtccctaccaactgagctaagctc 20919615  T
Q  425 acggggac 432  Q
    ||||||||    
T  20919614 acggggac 20919607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 421
Target Start/End: Complemental strand, 3596352 - 3596258
Alignment:
Q  329 gagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaag 421  Q
    ||||||||| ||| | |||||||||| ||||||||||||  ||||||||||||| |||||||||||||||  ||||| || |||||| |||||||    
T  3596352 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaattatgcaatgtctctgccaactaagctaag 3596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 11949980 - 11950070
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagttcacggggacg 433  Q
    |||||||||| ||||||||||||  |||||||| || | |||||||||||| ||| || || ||||||||||||||||| |||||||||||    
T  11949980 atgtggagaagtggggtgtccggggttcgaacctcgtcccctgcataaattgtgtaatttctctaccaacttagctaagctcacggggacg 11950070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 4858685 - 4858774
Alignment:
Q  344 tatgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    ||||||||||| ||||||| |  ||||||||||||  | |||||||||||||||  |||| |||||||||| || |||||||||||||||    
T  4858685 tatgtggagaagtggggtgccgagattcgaaccccagcccctgcataaattatgcaatgtccctaccaactaagttaagttcacggggac 4858774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 23405271 - 23405193
Alignment:
Q  356 tggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    |||||||||| || ||||||||||||| |||||||| ||||||  |||| |||||||||| ||||||| ||||||||||    
T  23405271 tggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgagctaagctcacggggac 23405193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 44558088 - 44558019
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcctaccaact 413  Q
    |||||||||| ||||||||||||  ||||||||||  | |||||||||||||||  ||||||||||||||    
T  44558088 atgtggagaagtggggtgtccggggttcgaaccccagcccctgcataaattatgcaatgtcctaccaact 44558019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 432
Target Start/End: Complemental strand, 1964454 - 1964350
Alignment:
Q  330 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacg 427  Q
    |||||||| ||| | || ||||||| ||||||||||||  || |||||||| | |||||||||||||||  |||||| | |||| | |||||||||||||    
T  1964454 agctcacacaattaaatatggagaagtggggtgtccggggtttgaaccccggcccctgcataaattatgcaatgtccctgccaattaagctaagttcacg 1964355  T
Q  428 gggac 432  Q
    |||||    
T  1964354 gggac 1964350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 433
Target Start/End: Original strand, 13242702 - 13242805
Alignment:
Q  332 ctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagttcacggg 429  Q
    |||||| ||| | |||||||||| || |||||||| | ||||||||||||| |||||||||||||||  || || ||| ||||| | ||||||||||| |    
T  13242702 ctcacacaattaaatgtggagaagtgaggtgtccgaggttcgaaccccgacccctgcataaattatgcaatatctctatcaactgatctaagttcacgag 13242801  T
Q  430 gacg 433  Q
    ||||    
T  13242802 gacg 13242805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 17034820 - 17034733
Alignment:
Q  346 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||| | ||||  || | |||||||| | ||||||| |||||||||    
T  17034820 tgtggagaagtggagtgtccgggattcgaaccccgactcctgcatataatatgcaatatccctaccaattgagctaagctcacgggga 17034733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 22653629 - 22653716
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  22653629 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 22653716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 23919461 - 23919544
Alignment:
Q  345 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 426  Q
    |||||||||| ||||||||| || |||||||||||||| ||| |||| ||||||  |||| |||||||||| ||||||| ||||    
T  23919461 atgtggagaaatggggtgtctgggattcgaaccccgacccctccatatattatgcaatgtccctaccaactgagctaagctcac 23919544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 2145719 - 2145809
Alignment:
Q  345 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggggacg 433  Q
    |||||||||| ||||||||| || |||| |||| |  | |||||||||||||||  |||||| |||||||| | |||||||||||||||||    
T  2145719 atgtggagaagtggggtgtcagggattcaaacctctgcccctgcataaattatgcaatgtccctaccaactgaactaagttcacggggacg 2145809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 11050744 - 11050829
Alignment:
Q  348 tggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||| ||||||||||||| ||||||||||  | |||||||| | ||||| || | |||||||||| ||||||| |||||||||    
T  11050744 tggagaagtggggtgtccggagttcgaaccccagcccctgcatataatatgtaatatccctaccaactgagctaagctcacgggga 11050829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 17089328 - 17089283
Alignment:
Q  346 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcata 390  Q
    ||||||||| ||| |||||||| |||||||||||||||||||||||    
T  17089328 tgtggagaagtggagtgtccgggattcgaaccccgactcctgcata 17089283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 431
Target Start/End: Complemental strand, 3446816 - 3446728
Alignment:
Q  345 atgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    |||||||||| |||||||||| || |||||||| || |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  3446816 atgtggagaagtggggtgtccggggttcgaacctcggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 3446728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 428
Target Start/End: Complemental strand, 11333768 - 11333665
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||| ||| | |||||||||||||||  |||| |||||||||| ||||||||||    
T  11333768 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgagctaagttc 11333669  T
Q  425 acgg 428  Q
    ||||    
T  11333668 acgg 11333665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 428
Target Start/End: Complemental strand, 11491789 - 11491686
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||| ||| | |||||||||||||||  |||| |||||||||| ||||||||||    
T  11491789 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgagctaagttc 11491690  T
Q  425 acgg 428  Q
    ||||    
T  11491689 acgg 11491686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 430
Target Start/End: Original strand, 36666542 - 36666647
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| |  ||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| |||||||||| ||||||| ||    
T  36666542 tagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagctc 36666641  T
Q  425 acgggg 430  Q
    ||||||    
T  36666642 acgggg 36666647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 31124604 - 31124711
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||| |||||| ||||||||||| | |||||||||||||||  |||||| | |||||| ||||||| ||    
T  31124604 tagagctcacacaattaaatgtggagaagtggggtatccggagttcgaaccccggcccctgcataaattatgcaatgtccttgccaactgagctaagctc 31124703  T
Q  425 acggggac 432  Q
    | ||||||    
T  31124704 atggggac 31124711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 45416143 - 45416215
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatg 397  Q
    |||||| ||||| ||| | |||||||||| |||||||||||| |||||||||||| | |||||||||||||||    
T  45416143 ttagagttcacacaattaaatgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatg 45416215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 47469038 - 47469146
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagtt 423  Q
    |||||||||||| ||| | |||||||||| |||||||||| || |||||||| |  | |||||||||||||||  |||| ||| |||||| ||||||| |    
T  47469038 ttagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcagcccctgcataaattatgcaatgtccctgccaactgagctaagct 47469137  T
Q  424 cacggggac 432  Q
    |||||||||    
T  47469138 cacggggac 47469146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 23991230 - 23991301
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||    
T  23991230 tagagctcacacaattaaatgtggagaagtggggtgtccagggttcgaaccccggcccctgcataaattatg 23991301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 8741559 - 8741470
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    |||||||||| ||||||||| ||  ||||||||||  | |||||||||||||||| |||| |||||||||| | ||||| ||||||||||    
T  8741559 atgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgtaatgtccctaccaactgaactaagctcacggggac 8741470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 43021606 - 43021691
Alignment:
Q  345 atgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgg 428  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||||||| ||||   ||| |||||||||| ||||||| ||||||    
T  43021606 atgtggagaagtggggtgtccgaggttcgaaccccgacccctgcataaaatatgcattgtccctaccaactaagctaagctcacgg 43021691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 6130018 - 6130105
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||| | ||||  || | |||||||||| ||||| | |||||||||    
T  6130018 tgtggagaagtggagtgtccggagttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctacgctcacgggga 6130105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 19564119 - 19564225
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 424  Q
    ||||| ||||| ||| | |||||||||| ||||||||||| | ||||||||||| | |||||||||||||||  |||||| | |||||| ||||||  ||    
T  19564119 tagagttcacacaattaaatgtggagaagtggggtgtccgaggttcgaaccccggc-cctgcataaattatgcaatgtccttgccaactgagctaaactc 19564217  T
Q  425 acggggac 432  Q
    ||||||||    
T  19564218 acggggac 19564225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 32594336 - 32594249
Alignment:
Q  346 tgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  32594336 tgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 32594249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 42490395 - 42490482
Alignment:
Q  346 tgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| |||||||||| || ||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  42490395 tgtggagaagtggggtgtccggggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 42490482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 45180506 - 45180585
Alignment:
Q  345 atgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgtcctaccaacttagctaagttc 424  Q
    |||| ||||| |||| |||| || |||||||||| || |||||||||||||||| || | ||||||| | ||||||||||    
T  45180506 atgtagagaagtgggttgtcagggttcgaacccctacccctgcataaattatgtaatatactaccaattgagctaagttc 45180585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 50119076 - 50119005
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||| ||||| |||||||||| ||||    
T  50119076 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaactccgacccctgcataaaatatg 50119005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 11860141 - 11860039
Alignment:
Q  332 ctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatg-tcctaccaacttagctaagttcacggg 429  Q
    |||||| ||| | |||||||||| |||||||||| || ||||||||||||| |||  ||||||||||  ||| | || |||||| ||||||| |||||||    
T  11860141 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccgacccctatataaattatgcaatgtttctgccaactgagctaagctcacggg 11860042  T
Q  430 gac 432  Q
    |||    
T  11860041 gac 11860039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 29204731 - 29204642
Alignment:
Q  345 atgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    |||||||||| |||||| || || ||||||||| || ||| |||||||||||||  |||| |||||||||| ||||||| ||||| ||||    
T  29204731 atgtggagaagtggggtatctgggattcgaacctcggctcttgcataaattatgcaatgtccctaccaactgagctaagctcacgaggac 29204642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 49503134 - 49503195
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc 405  Q
    ||||| |||||||||||||||||  ||||||| ||| | |||||||||||||||| ||||||    
T  49503134 atgtgaagaactggggtgtccggcgttcgaactccggcccctgcataaattatgtaatgtcc 49503195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 3694901 - 3694945
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcata 390  Q
    ||||||||| ||| |||||||||||||||||||| ||||| ||||    
T  3694901 tgtggagaagtggagtgtccggattcgaaccccggctcctacata 3694945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 8984491 - 8984535
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcata 390  Q
    ||||||||| ||| |||||||| ||||||||||| ||||||||||    
T  8984491 tgtggagaagtggagtgtccgggttcgaaccccggctcctgcata 8984535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 18607778 - 18607882
Alignment:
Q  330 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacg 427  Q
    |||||||| ||| | |||| ||||| |||||||| |||  ||||||||||  | |||||||||||||||  |||| |||||||||| ||||||| |||||    
T  18607778 agctcacacaattaaatgtagagaagtggggtgttcggggttcgaaccccagcccctgcataaattatgcaatgtccctaccaactcagctaagctcacg 18607877  T
Q  428 gggac 432  Q
     ||||    
T  18607878 aggac 18607882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 433
Target Start/End: Original strand, 30245990 - 30246098
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 424  Q
    ||||||||| | ||| | |||||||||| |||||| | |||  |||||| |||||| ||||||| |||||||  |||||| |||||| | ||||||| ||    
T  30245990 tagagctcatacaattaaatgtggagaagtggggtattcggggttcgaatcccgacccctgcatcaattatgcaatgtccctaccaaatgagctaagctc 30246089  T
Q  425 acggggacg 433  Q
    |||||||||    
T  30246090 acggggacg 30246098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 34557289 - 34557357
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaatt 394  Q
    ||||||||||| | | | |||||||||| | ||||||||  ||||||||||||||| ||||||||||||    
T  34557289 tagagctcacacatttaaatgtggagaagtagggtgtccaagattcgaaccccgacccctgcataaatt 34557357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 393
Target Start/End: Original strand, 39670794 - 39670862
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaat 393  Q
    |||||||||||| ||| | |||||||||| |||| |||| ||| |||||||||| || |||||||||||    
T  39670794 ttagagctcacacaattaaatgtggagaagtgggatgtctggagttcgaaccccaacccctgcataaat 39670862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 50537052 - 50537004
Alignment:
Q  343 atatgtggagaactggggtgtccg-gattcgaaccccgactcctgcata 390  Q
    |||||||||||| ||||||||||| | |||||||||| |||||||||||    
T  50537052 atatgtggagaagtggggtgtccgaggttcgaaccccaactcctgcata 50537004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 430
Target Start/End: Complemental strand, 51890901 - 51890796
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| ||| |||||| ||||||| ||    
T  51890901 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagctc 51890802  T
Q  425 acgggg 430  Q
    ||||||    
T  51890801 acgggg 51890796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 29406459 - 29406360
Alignment:
Q  329 gagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 426  Q
    ||||||||| ||| | |||||||||| |||| |||||||| ||||||||||||| |||||||||||||||  |||| |||||||| | ||||||| ||||    
T  29406459 gagctcacacaattaaatgtggagaagtgggttgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaattgagctaagctcac 29406360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 2629683 - 2629612
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    ||||||||||| ||| | |||||||||| |||||||| |||  ||||||||||||| |||||||||||||||    
T  2629683 tagagctcacacaattaaatgtggagaagtggggtgttcggggttcgaaccccgacccctgcataaattatg 2629612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 32293212 - 32293105
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||  ||||| || ||| ||||||||| |||||||||||||||  |||||| || ||||| ||||||| ||    
T  32293212 tagagctcacataattaaatgtggagaagtggaatgtccagggttctaaccccgacccctgcataaattatgcaatgtccttatcaactgagctaagctc 32293113  T
Q  425 acggggac 432  Q
    ||||||||    
T  32293112 acggggac 32293105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 13088995 - 13088942
Alignment:
Q  345 atgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatg 397  Q
    ||||||| || ||||||||||| ||||||||||||||| |||||||||||||||    
T  13088995 atgtggaaaagtggggtgtccgagattcgaaccccgacccctgcataaattatg 13088942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 38848085 - 38848154
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaatt 394  Q
    |||||||||||| | | | |||||||||| |||||||||| || ||||||||||||| ||||||||||||    
T  38848085 ttagagctcacacatttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaatt 38848154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 12625933 - 12625862
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    ||||| ||||| ||| | |||||||||| ||||||||||||  ||||||| ||||| |||||||||||||||    
T  12625933 tagagttcacacaattaaatgtggagaagtggggtgtccggtgttcgaactccgacccctgcataaattatg 12625862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 23924838 - 23924945
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||  | |||||||||| ||  ||||||||  ||||||||||| | |||||||||||||||  |||| |||||||| | || |||||||    
T  23924838 tagagctcacacaaataaatgtggagaagtgaagtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaattgagttaagttc 23924937  T
Q  425 acggggac 432  Q
    ||||||||    
T  23924938 acggggac 23924945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 42664085 - 42664014
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    ||||||||||| ||| | |||||||||| |||||||||| ||||||||||||| ||  |||| |||||||||    
T  42664085 tagagctcacacaattaaatgtggagaagtggggtgtccaggattcgaaccccaacctctgcgtaaattatg 42664014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 46791177 - 46791244
Alignment:
Q  330 agctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattat 396  Q
    |||||||| ||| | ||||| |||| ||||||||||||| ||||||||||  ||||||||||||||||    
T  46791177 agctcacagaattaaatgtgaagaagtggggtgtccggagttcgaaccccatctcctgcataaattat 46791244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 45139865 - 45139951
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggg 429  Q
    |||||||||| || |||||||||  ||||||||||| | ||||||||||||||   |||| |||||||||| ||||||| |||||||    
T  45139865 atgtggagaagtgaggtgtccggggttcgaaccccggcccctgcataaattatacaatgtccctaccaactgagctaagctcacggg 45139951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 11294822 - 11294875
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatg 397  Q
    |||||||||| ||||||||||||  ||||||||||| | |||||||||||||||    
T  11294822 atgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatg 11294875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 430
Target Start/End: Complemental strand, 42002410 - 42002305
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| ||||||||| | | ||| |||| || | ||| |||||||||||  |||| |||||||||| ||||||| ||    
T  42002410 tagagctcacacaattaaatgtggagaagtggggtgtctgaggttcaaaccacggcccctacataaattatgcaatgtccctaccaactaagctaagctc 42002311  T
Q  425 acgggg 430  Q
    ||||||    
T  42002310 acgggg 42002305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 429
Target Start/End: Complemental strand, 43978092 - 43978008
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggg 429  Q
    ||||||||| ||| |||| ||| ||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| |||||||    
T  43978092 tgtggagaagtggagtgtacgggttcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcacggg 43978008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 433
Target Start/End: Complemental strand, 481110 - 481007
Alignment:
Q  332 ctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 429  Q
    |||||| ||| | |||||||||| ||||||||||||  |||||||| || | |||||||||||||||  |||||| |||||||| ||||||| |||||||    
T  481110 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccgcggcccctgcataaattatgcaatgtccctaccaactgagctaagctcacggg 481011  T
Q  430 gacg 433  Q
    ||||    
T  481010 gacg 481007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 12770472 - 12770365
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||||||||  |||| |||| ||||| ||||||| ||    
T  12770472 tagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgagctaagctc 12770373  T
Q  425 acggggac 432  Q
    | ||||||    
T  12770372 atggggac 12770365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 17027866 - 17027952
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| |||||||||||| ||||||||||| |||| ||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  17027866 tgtggagaagtggggtgtccgggttcgaaccccggctccggcatataatatgcaatatccctaccaactgagctaagctcacgggga 17027952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 17558302 - 17558388
Alignment:
Q  346 tgtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| |||||||||||| ||||||||||| |||| ||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  17558302 tgtggagaagtggggtgtccgggttcgaaccccggctccggcatataatatgcaatatccctaccaactgagctaagctcacgggga 17558388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 42877117 - 42877031
Alignment:
Q  347 gtggagaactggggtgtccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    |||||||| |||||||| ||| |||||||| || | |||||||||||||||  |||| |||||||| | ||||||| ||||||||||    
T  42877117 gtggagaagtggggtgttcgggttcgaaccacggcccctgcataaattatgcaatgtccctaccaattgagctaagctcacggggac 42877031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 433
Target Start/End: Original strand, 30676269 - 30676378
Alignment:
Q  326 ttagagctcacaaaatcatatgtggagaactggggtg-tccggattcgaaccccgactcctgcataaattatgtcatgtc-ctaccaacttagctaagtt 423  Q
    |||||||||||| ||| | |||||||||| ||||||| |  |||||||||||| |||  || ||||||||||   ||||| ||||||||| || ||||||    
T  30676269 ttagagctcacacaattaaatgtggagaaatggggtgtttgggattcgaaccctgacctctacataaattatacaatgtctctaccaactgagttaagtt 30676368  T
Q  424 cacggggacg 433  Q
    ||||||||||    
T  30676369 cacggggacg 30676378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 431
Target Start/End: Original strand, 14876566 - 14876674
Alignment:
Q  326 ttagagctcacaaaatcatat-gtggagaactggggtgtccg-gattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagt 422  Q
    |||||||||||| ||| |||| |||||||| ||| ||||||| | ||||||||||| |||||||||| | ||||  || | |||||||||| |||||||     
T  14876566 ttagagctcacacaattatattgtggagaagtggagtgtccgaggttcgaaccccggctcctgcatataatatgcaatttccctaccaactgagctaagc 14876665  T
Q  423 tcacgggga 431  Q
    |||||||||    
T  14876666 tcacgggga 14876674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 17698607 - 17698520
Alignment:
Q  346 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| ||| |||||||| |||||||||||| |||||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  17698607 tgtggagaagtggagtgtccgggattcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 17698520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 25824868 - 25824939
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtc-cggattcgaaccccgactcctgcataaattatg 397  Q
    ||||||||||| ||| |||||| ||||| |||||||||  || ||||||||||||| | |||||||||||||    
T  25824868 tagagctcacacaattatatgttgagaagtggggtgtctggggttcgaaccccgacccttgcataaattatg 25824939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 43847039 - 43846968
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    ||||||||||| ||| | |||||||||| |||||||||| || |||||||  |||| |||||||||||||||    
T  43847039 tagagctcacacaattaaatgtggagaagtggggtgtccagggttcgaacatcgacccctgcataaattatg 43846968  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 25890389 - 25890471
Alignment:
Q  346 tgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 426  Q
    ||||||||| |||||||||| || ||||||||||| | | |||||||||||||  |||| |||||||||| ||||||| ||||    
T  25890389 tgtggagaagtggggtgtccggggttcgaaccccggcccttgcataaattatgcaatgtccctaccaactaagctaagctcac 25890471  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 27077082 - 27077164
Alignment:
Q  346 tgtggagaactggggtgtccgg-attcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcac 426  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||| | ||||  || | |||||||||| ||||||| ||||    
T  27077082 tgtggagaagtggggtgtccgggattcgaaccccgacccctgcatataatatgcaatatccctaccaactgagctaagctcac 27077164  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 13059161 - 13059250
Alignment:
Q  345 atgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    |||||||||| ||||||||| ||  ||||||||||  | |||||||||||||||   ||| |||||||||| ||||||| ||||||||||    
T  13059161 atgtggagaagtggggtgtcaggggttcgaacccctgcccctgcataaattatgcattgtccctaccaactgagctaagctcacggggac 13059250  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 24517356 - 24517295
Alignment:
Q  369 ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggg 429  Q
    ||||||||||  ||||||||||||| |||  |||||| |||||||| |||||||||||||||    
T  24517356 ttcgaacccctgctcctgcataaatcatgcaatgtccctaccaactgagctaagttcacggg 24517295  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 433
Target Start/End: Complemental strand, 11231524 - 11231416
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| |  ||| ||||| ||||||||||||  ||||||||||| | |||||||||||||||  |||| |||  ||||| ||||||| ||    
T  11231524 tagagctcacacaattaattgtcgagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctc 11231425  T
Q  425 acggggacg 433  Q
    | |||||||    
T  11231424 atggggacg 11231416  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 22274577 - 22274641
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcata 390  Q
    ||||||||||| ||| |  ||||||||| |||||||||| || ||||||||||| ||||||||||    
T  22274577 tagagctcacacaattaattgtggagaagtggggtgtccggggttcgaaccccggctcctgcata 22274641  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 32620037 - 32620108
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatg 397  Q
    ||||||||| | ||| | |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  32620037 tagagctcatacaattaaatgtggagaaatggggtgtccaggattcgaaccccaactcctgcataaattatg 32620108  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 20568294 - 20568358
Alignment:
Q  369 ttcgaaccccgactcctgcataaattatgtcatgtcc-taccaacttagctaagttcacggggac 432  Q
    ||||||||||||| |||||||| ||||||  |||||| |||||||| ||||||| ||||||||||    
T  20568294 ttcgaaccccgacccctgcatatattatgcaatgtccttaccaactgagctaagctcacggggac 20568358  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 15091533 - 15091446
Alignment:
Q  346 tgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgggga 431  Q
    ||||||||| |||||||||| |||||||||||||| | |||||||| | ||||  || | |||||||||| ||||||| |||||||||    
T  15091533 tgtggagaagtggggtgtccgggattcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctcacgggga 15091446  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 16801857 - 16801786
Alignment:
Q  360 gtgtccgga-ttcgaaccccgactcctgcata-aattatgtcatgtcctaccaacttagctaagttcacggg 429  Q
    ||||||||| |||||||||||||||||||||| ||| ||||  ||||||||||||| ||||| | |||||||    
T  16801857 gtgtccggaattcgaaccccgactcctgcatataataatgttttgtcctaccaactgagctatgctcacggg 16801786  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 431
Target Start/End: Complemental strand, 24319117 - 24319011
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| |  ||||||||| ||| ||||||||  ||||||||||| | |||||||||||||||  |||| |||||||||| | ||||  ||    
T  24319117 tagagctcacacaattaattgtggagaagtggagtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgaactaaactc 24319018  T
Q  425 acgggga 431  Q
    |||||||    
T  24319017 acgggga 24319011  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 32788820 - 32788890
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattat 396  Q
    ||||||||| | ||| | ||||| |||| ||||||||||||| |||||||||| || ||||||||||||||    
T  32788820 tagagctcatacaattaaatgtgtagaagtggggtgtccggagttcgaaccccaacccctgcataaattat 32788890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 8443643 - 8443566
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt 403  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||| ||||  ||| |||||||||||||||| ||||    
T  8443643 tagagctcacagaattaaatgtggagaagtggggtgtccggggttctaaccatgacccctgcataaattatgtaatgt 8443566  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 8452447 - 8452370
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt 403  Q
    ||||||||||| ||| | |||||||||| |||||||||| || ||| ||||  ||| |||||||||||||||| ||||    
T  8452447 tagagctcacagaattaaatgtggagaagtggggtgtccggggttctaaccatgacccctgcataaattatgtaatgt 8452370  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 23610331 - 23610388
Alignment:
Q  372 gaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacgg 428  Q
    |||||||||| |||||||||||||||  |||| |||||||||| ||||||| ||||||    
T  23610331 gaaccccgacccctgcataaattatgcaatgtccctaccaactgagctaagctcacgg 23610388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 34268343 - 34268279
Alignment:
Q  369 ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttcacggggac 432  Q
    ||||||||| ||| |||||||||||||||  |||| |||||||||  ||||||| ||||||||||    
T  34268343 ttcgaaccctgacccctgcataaattatgcaatgtccctaccaacggagctaagctcacggggac 34268279  T

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Target: scaffold0257 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 21898 - 21791
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    |||| |||||||||| | |||||||||| |||||||||| |||||||| ||||| | ||||||||||||||   |||| |||| ||||| |||||| |||    
T  21898 tagaactcacaaaattaaatgtggagaattggggtgtccgggattcgatccccggcccctgcataaattatacaatgtgcctatcaactgagctaaattc 21799  T
Q  425 acggggac 432  Q
    | ||||||    
T  21798 atggggac 21791  T

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Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 421
Target Start/End: Original strand, 28789 - 28883
Alignment:
Q  329 gagctcacaaaatcatatgtggagaactggggtgtcc-ggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaag 421  Q
    ||||||||| ||| | |||||||||| |||||||||| || ||||||||||| | |||||||||| ||||| |||| |||| ||||| |||||||    
T  28789 gagctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaagtatgtaatgtccctatcaactgagctaag 28883  T

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Target: scaffold0250 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 428
Target Start/End: Complemental strand, 15109 - 15006
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtg-tccggattcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| | |||||||||| ||||||| |  || ||||||||  ||| |||||||||||||||  |||| |||||||||| ||||||| ||    
T  15109 tagagctcacataattaaatgtggagaagtggggtgtttggggttcgaaccatgacccctgcataaattatgcaatgtccctaccaactgagctaagctc 15010  T
Q  425 acgg 428  Q
    ||||    
T  15009 acgg 15006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 433
Target Start/End: Original strand, 2928 - 3036
Alignment:
Q  327 tagagctcacaaaatcatatgtggagaactggggtgtccgga-ttcgaaccccgactcctgcataaattatgtcatgt-cctaccaacttagctaagttc 424  Q
    ||||||||||| ||| |  ||| ||||| ||||||||||||  ||||||||||| | |||||||||||||||  |||| |||  ||||| ||||||| ||    
T  2928 tagagctcacacaattaattgtcgagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctc 3027  T
Q  425 acggggacg 433  Q
    | |||||||    
T  3028 atggggacg 3036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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