View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9397_low_6 (Length: 368)
Name: NF9397_low_6
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9397_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 154 - 361
Target Start/End: Original strand, 55377905 - 55378113
Alignment:
| Q |
154 |
tctcttttaaatcaatagctatatgtcatgtatttttatatgctatcggattttagatttcaagtaacattgttatactaaaa-aatatctagttatagt |
252 |
Q |
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| T |
55377905 |
tctcttttaaatcaatagctatatgtcatgtatttttatatgctatcggattttagatttcaagtaacattgttatactaaaaaaatatctagttatagt |
55378004 |
T |
|
| Q |
253 |
atagtgtacacagttgaactagatgttgtatcatttacgatcacaagtttgatttcatcattagattaagaaattccaccattgcttcaagtgatatatg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55378005 |
atagtgtacacagttgaactagatgttgtatcatttacgatcacaagtttgatttcatcattagattaagaaattccaccattgcttcaagtgatatatg |
55378104 |
T |
|
| Q |
353 |
atgtccatc |
361 |
Q |
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| T |
55378105 |
atgtccatc |
55378113 |
T |
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