View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9397_low_7 (Length: 325)

Name: NF9397_low_7
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9397_low_7
NF9397_low_7
[»] chr4 (6 HSPs)
chr4 (19-206)||(50680325-50680512)
chr4 (106-207)||(50662064-50662166)
chr4 (239-315)||(8096896-8096972)
chr4 (29-102)||(50661911-50661984)
chr4 (262-311)||(8097107-8097156)
chr4 (29-110)||(50249566-50249647)
[»] chr5 (5 HSPs)
chr5 (239-315)||(24958983-24959059)
chr5 (239-315)||(28850121-28850197)
chr5 (242-312)||(24959171-24959241)
chr5 (262-311)||(28849937-28849986)
chr5 (262-294)||(24959096-24959128)
[»] chr3 (12 HSPs)
chr3 (239-315)||(41004608-41004684)
chr3 (239-315)||(41013389-41013465)
chr3 (239-315)||(8199583-8199659)
chr3 (239-315)||(9549416-9549492)
chr3 (242-312)||(41004426-41004496)
chr3 (242-312)||(41013207-41013277)
chr3 (262-312)||(9549512-9549562)
chr3 (262-294)||(41004539-41004571)
chr3 (262-294)||(41013320-41013352)
chr3 (260-311)||(16818257-16818308)
chr3 (260-294)||(9549335-9549369)
chr3 (262-294)||(8199502-8199534)
[»] chr1 (3 HSPs)
chr1 (239-315)||(31546276-31546352)
chr1 (242-312)||(31546094-31546164)
chr1 (262-294)||(31546207-31546239)
[»] chr2 (14 HSPs)
chr2 (239-315)||(15946843-15946919)
chr2 (239-315)||(35144929-35145005)
chr2 (239-315)||(42568347-42568423)
chr2 (239-315)||(25500914-25500990)
chr2 (239-312)||(15946560-15946633)
chr2 (239-302)||(24291304-24291367)
chr2 (242-312)||(35144747-35144817)
chr2 (262-312)||(24291234-24291284)
chr2 (262-311)||(42568558-42568607)
chr2 (262-294)||(15946956-15946988)
chr2 (262-294)||(35144860-35144892)
chr2 (243-294)||(15946670-15946721)
chr2 (262-294)||(15946762-15946794)
chr2 (260-312)||(25500842-25500894)
[»] scaffold1649 (6 HSPs)
scaffold1649 (239-312)||(1398-1471)
scaffold1649 (255-315)||(925-985)
scaffold1649 (260-315)||(1302-1357)
scaffold1649 (262-294)||(844-876)
scaffold1649 (280-315)||(1118-1153)
scaffold1649 (262-294)||(1038-1070)
[»] chr8 (6 HSPs)
chr8 (243-315)||(17667447-17667519)
chr8 (243-315)||(39839433-39839505)
chr8 (243-315)||(17667932-17668004)
chr8 (243-293)||(17667727-17667777)
chr8 (243-291)||(39839519-39839567)
chr8 (275-315)||(17667674-17667714)
[»] chr7 (2 HSPs)
chr7 (243-315)||(13837611-13837683)
chr7 (243-294)||(13837517-13837568)
[»] chr6 (5 HSPs)
chr6 (239-315)||(25500690-25500766)
chr6 (260-315)||(5992496-5992551)
chr6 (260-312)||(5992403-5992455)
chr6 (262-312)||(25500786-25500836)
chr6 (260-294)||(25500609-25500643)
[»] scaffold1937 (4 HSPs)
scaffold1937 (254-315)||(342-403)
scaffold1937 (262-312)||(452-502)
scaffold1937 (262-294)||(258-290)
scaffold1937 (239-267)||(522-550)
[»] scaffold2150 (3 HSPs)
scaffold2150 (243-315)||(426-497)
scaffold2150 (260-312)||(614-666)
scaffold2150 (265-309)||(524-568)
[»] scaffold0002 (3 HSPs)
scaffold0002 (243-315)||(126234-126305)
scaffold0002 (275-315)||(126367-126407)
scaffold0002 (262-312)||(126455-126505)
[»] scaffold0156 (1 HSPs)
scaffold0156 (260-312)||(29299-29351)
[»] scaffold0083 (2 HSPs)
scaffold0083 (260-312)||(21631-21683)
scaffold0083 (262-294)||(21789-21821)
[»] scaffold0257 (1 HSPs)
scaffold0257 (262-294)||(1000-1032)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 50680325 - 50680512
Alignment:
Q  19 cttttcgaaatattaccatcagttcggtcagtacccaacatgctaagggagctcggactttcgttcatatgttttatttggttactatgttttcaatatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50680325 cttttcgaaatattaccatcagttcggtcagtacccaacatgctaagagagctcggactttcgttcatatgttttatttggttactatgttttcaatatt 50680424  T
Q  119 tcaactcaagttaggatttggtgtttccatttccataaaaagaaattaattgtattgccaacttacttttggctattttgtaatcaac 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50680425 tcaactcaagttaggatttggtgtttccatttccataaagagaaattaattgtattgccaacttacttttggctattttgtaatcaac 50680512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 50662064 - 50662166
Alignment:
Q  106 tgttttcaatatttcaactcaagttaggatttggtgtttccatttccataaaaagaaattaattgtattgccaacttact-tttggctattttgtaatca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||| ||||||||||||||    
T  50662064 tgttttcaatatttcaactcaagttaggatttggtgtttccatttccataaagagaaaataattgtagtgccaactcactctttgcctattttgtaatca 50662163  T
Q  205 acc 207  Q
    |||    
T  50662164 acc 50662166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 8096972 - 8096896
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8096972 aggcgtgaccccgccgttggttttgattagtgggcaggtaccccttcagtggttgagtaaatggtttgttacctttg 8096896  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 50661911 - 50661984
Alignment:
Q  29 tattaccatcagttcggtcagtacccaacatgctaagggagctcggactttcgttcatatgttttatttggtta 102  Q
    ||||| ||| |||||||| |||||||||||||||||| ||| || |||||| ||||||||||||||||||||||    
T  50661911 tattagcatgagttcggttagtacccaacatgctaagagagttcagactttagttcatatgttttatttggtta 50661984  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 8097156 - 8097107
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacc 311  Q
    |||||| |||||||||||||||||||||||||| | || |||||||||||    
T  8097156 tgattaatgggcagttaccccttcagtggttgaattaacggtttgttacc 8097107  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 50249647 - 50249566
Alignment:
Q  29 tattaccatcagttcggtcagtacccaacatgctaagggagctcggactttcgttcatatgttttatttggttactatgttt 110  Q
    ||||| || ||||| |||||||||| | ||||||| | |||  |||||||  |||||||||||||||||| || ||||||||    
T  50249647 tattagcaccagtttggtcagtaccaagcatgctaggagagtacggacttgagttcatatgttttatttgttttctatgttt 50249566  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 24959059 - 24958983
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24959059 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 24958983  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 28850121 - 28850197
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28850121 aggcgtgaccccgccgttggttttgattagtgggcaggtaccccttcagtggttgagtaaatggtttgttacctttg 28850197  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 24959241 - 24959171
Alignment:
Q  242 cgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||    
T  24959241 cgtgaccccgccgttggttttgattagtggacagttaccccttcaatggttgaattaatagattgttacct 24959171  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 28849937 - 28849986
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacc 311  Q
    |||||| |||||||||||||||||||||||||| | || |||||||||||    
T  28849937 tgattaatgggcagttaccccttcagtggttgaattaacggtttgttacc 28849986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 24959128 - 24959096
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  24959128 tgattagtgggcagttaccccttcagtggttga 24959096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 41004608 - 41004684
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41004608 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 41004684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 41013389 - 41013465
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41013389 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 41013465  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 8199659 - 8199583
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8199659 aggcgtgaccctgccgttgttttttattagtgggcagttgccccttcagtggttgagtaaatggtttgttacctttg 8199583  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 9549492 - 9549416
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9549492 aggcgtgatctcgtcgttggttttgattagtgggcatttaccccttcagtggttgagtaaatggtttgttacctttg 9549416  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 41004426 - 41004496
Alignment:
Q  242 cgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||    
T  41004426 cgtgaccccgccgttggttttgattagtggacagttaccccttcaatggttgaattaatagattgttacct 41004496  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 41013207 - 41013277
Alignment:
Q  242 cgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||    
T  41013207 cgtgaccccgccgttggttttgattagtggacagttaccccttcaatggttgaattaatagattgttacct 41013277  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 9549562 - 9549512
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||||||||||||||||| | || | ||||||||||    
T  9549562 tgattagtgggcagttaccccttcagtggttgaatcaacgttttgttacct 9549512  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 41004539 - 41004571
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  41004539 tgattagtgggcagttaccccttcagtggttga 41004571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 41013320 - 41013352
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  41013320 tgattagtgggcagttaccccttcagtggttga 41013352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 16818308 - 16818257
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacc 311  Q
    |||||||||||||  |||||||||||||||||||  | ||||||||||||||    
T  16818308 tttgattagtgggttgttaccccttcagtggttggattaatggtttgttacc 16818257  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 9549369 - 9549335
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttga 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  9549369 tttgattagtgggcagttaccccttcaatggttga 9549335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 8199534 - 8199502
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||| ||||||    
T  8199534 tgattagtgggcagttaccccttcagcggttga 8199502  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 31546276 - 31546352
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31546276 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 31546352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 31546094 - 31546164
Alignment:
Q  242 cgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||    
T  31546094 cgtgaccccgccgttggttttgattagtggacagttaccccttcaatggttgaattaatagattgttacct 31546164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 31546207 - 31546239
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  31546207 tgattagtgggcagttaccccttcagtggttga 31546239  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 15946919 - 15946843
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15946919 aggcgtgatcccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 15946843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 35144929 - 35145005
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35144929 aggcgtgaccccaccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 35145005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 42568423 - 42568347
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42568423 aggcgtgaccccgccgttggttttgattagtgggcaggtaccccttcagtggttgagtaaatggtttgttacctttg 42568347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 25500914 - 25500990
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25500914 aggcgtgaccccgccgttgttttttattagtgggcagttaccccttcagtggttgagtaaacggtttgttacctttg 25500990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 15946633 - 15946560
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15946633 aggcgtggtcccgccgttggttttgattagtgggtagttaccccttcagtggttgagtaaatggtttgttacct 15946560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 24291304 - 24291367
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatgg 302  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24291304 aggcgtgaccctgccgttggttttgattagtgggtagttaccccttcagtggttgagtaaatgg 24291367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 35144747 - 35144817
Alignment:
Q  242 cgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||    
T  35144747 cgtgaccccgccgttggttttgattagtggacagttaccccttcaatggttgaattaatagattgttacct 35144817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 24291234 - 24291284
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||||||||||||||| |||||||||||| | || ||||||||||||    
T  24291234 tgattagtgggcagttacccgttcagtggttgaattaacggtttgttacct 24291284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 42568607 - 42568558
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacc 311  Q
    |||||| |||||||||||||||||||||||||| | || |||||||||||    
T  42568607 tgattaatgggcagttaccccttcagtggttgaattaacggtttgttacc 42568558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 15946988 - 15946956
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  15946988 tgattagtgggcagttaccccttcagtggttga 15946956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 35144860 - 35144892
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  35144860 tgattagtgggcagttaccccttcagtggttga 35144892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 15946721 - 15946670
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttga 294  Q
    |||| ||||||||| ||||||||||||||| |||| ||| ||||||||||||    
T  15946721 gtgatcccgccgtttgttttgattagtgggtagttgcccattcagtggttga 15946670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 15946794 - 15946762
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||| ||||||||||||||||    
T  15946794 tgattagtgggcagttgccccttcagtggttga 15946762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 25500842 - 25500894
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    |||||||||||||  | |||||||||||||||||| | || ||||||||||||    
T  25500842 tttgattagtgggttgataccccttcagtggttgaattaacggtttgttacct 25500894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: scaffold1649
Description:

Target: scaffold1649; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 1471 - 1398
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1471 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttattacct 1398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 985 - 925
Alignment:
Q  255 ttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  985 ttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 1357 - 1302
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  1357 tttgattagtgggcagttaccccatcaatggttgagtaaatggtttgttacctttg 1302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 876 - 844
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  876 tgattagtgggcagttaccccttcagtggttga 844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 1153 - 1118
Alignment:
Q  280 cccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1153 cccttcagtggttaagtaaatggtttgttacctttg 1118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 1070 - 1038
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||| ||||||||||||||||||||||||||    
T  1070 tgattaatgggcagttaccccttcagtggttga 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 17667519 - 17667447
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17667519 gtgaccccgccgttggttttgtttagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 17667447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 39839505 - 39839433
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39839505 gtgaccccgccgttggttttgtttagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 39839433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 17668004 - 17667932
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17668004 gtgacctcgccgttggttttgattagtgggcagttaccccttcagtggttgattaaatggtttgttacctttg 17667932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 17667777 - 17667727
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttg 293  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17667777 gtgaccccgccgttggttttgtttagtgggcagttaccccttcagtggttg 17667727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 39839567 - 39839519
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggt 291  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  39839567 gtgaccctgccgttggttttgattagtgggcagttacctcttcagtggt 39839519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 17667714 - 17667674
Alignment:
Q  275 gttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  17667714 gttacctcttcagtggttgattaaatggtttgttacctttg 17667674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 13837611 - 13837683
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13837611 gtgaccccgccgttggttttgtttagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 13837683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 13837517 - 13837568
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttga 294  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  13837517 gtgaccctgccgttggttttgattagtggacagttacctcttcagtggttga 13837568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 25500766 - 25500690
Alignment:
Q  239 aggcgtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25500766 aggcgtgatcccgtcgttggttttaattagtgggcatttaccccttcagtggttgagtaaatggtttgttacctttg 25500690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 5992496 - 5992551
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5992496 tttgattagtgggcagttaccccttcaatggttgagtaaatggtttgttacctttg 5992551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 5992403 - 5992455
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| ||||||    
T  5992403 tttgattagtggtttgttaccccttcagtggttgagtaaatggtttattacct 5992455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 25500836 - 25500786
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||||||||||||||||| | || | ||||||||||    
T  25500836 tgattagtgggcagttaccccttcagtggttgaatcaacgttttgttacct 25500786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 25500643 - 25500609
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttga 294  Q
    ||||||||||||| |||||||||||||||||||||    
T  25500643 tttgattagtgggtagttaccccttcagtggttga 25500609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: scaffold1937
Description:

Target: scaffold1937; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 342 - 403
Alignment:
Q  254 gttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  342 gttggttttgattagtgggcaattaccccttcagtggttgagtaaatggtttgttacctttg 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 452 - 502
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||||||||||||||||| | || | ||||||||||    
T  452 tgattagtgggcagttaccccttcagtggttgaattaacgttttgttacct 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 258 - 290
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||| ||||||||||||||||    
T  258 tgattagtgggcagttgccccttcagtggttga 290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 522 - 550
Alignment:
Q  239 aggcgtgaccccgccgttggttttgatta 267  Q
    |||||||||||||||||||||||||||||    
T  522 aggcgtgaccccgccgttggttttgatta 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2150 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: scaffold2150
Description:

Target: scaffold2150; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 497 - 426
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  497 gtgaccctgccgttggttttggttagtgggcagttaccccttcaat-gttaagtaaatggtttgttacctttg 426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2150; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 666 - 614
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||||||||||||||||||  | |||| ||||||||||    
T  666 tttgattagtgggcagttaccccttcagtggttggattaatgttttgttacct 614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2150; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 568 - 524
Alignment:
Q  265 ttagtgggcagttaccccttcagtggttgagtaaatggtttgtta 309  Q
    ||||||||||||||||||||||||| |||| | |||| |||||||    
T  568 ttagtgggcagttaccccttcagtgtttgaattaatgttttgtta 524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 126234 - 126305
Alignment:
Q  243 gtgaccccgccgttggttttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||||||| |||||||||| |||||||||||| ||||||||| | ||||||| ||||||||||||||||||    
T  126234 gtgaccccgctgttggttttggttagtgggcagtaaccccttcaat-gttgagttaatggtttgttacctttg 126305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 126367 - 126407
Alignment:
Q  275 gttaccccttcagtggttgagtaaatggtttgttacctttg 315  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  126367 gttacctcttcagtggttgagtaaatggtttgttacctttg 126407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 126455 - 126505
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||| ||||||||||||| | || | ||||||||||    
T  126455 tgattagtgggcagttacctcttcagtggttgaattaacgttttgttacct 126505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 29351 - 29299
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  29351 tttgattagtgggcagttaccccttcagtggttggattaatggtttgttacct 29299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 21631 - 21683
Alignment:
Q  260 tttgattagtgggcagttaccccttcagtggttgagtaaatggtttgttacct 312  Q
    ||||||||||||||||||||||||| ||||||||  | |||||||||||||||    
T  21631 tttgattagtgggcagttacccctttagtggttggattaatggtttgttacct 21683  T

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Target: scaffold0083; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 21789 - 21821
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  21789 tgattagtgggcagttaccccttcagtggttga 21821  T

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Target: scaffold0257 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 1000 - 1032
Alignment:
Q  262 tgattagtgggcagttaccccttcagtggttga 294  Q
    |||||||||||||||||||||||||||||||||    
T  1000 tgattagtgggcagttaccccttcagtggttga 1032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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