View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9397_low_9 (Length: 274)
Name: NF9397_low_9
Description: NF9397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9397_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 28712809 - 28713054
Alignment:
| Q |
14 |
agggtgtccaacaagttattttaggacaaatcatacgatatttctagaaaaactgtgcattggcggtttggacgctacgagaaaaccagacgtattgagc |
113 |
Q |
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| T |
28712809 |
agggtgtccaacaagttattttagtacaaaacatacgatatttctagaaaaactgtgcattggcggtttggacgctacgagaaaactagacgtattgagc |
28712908 |
T |
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| Q |
114 |
aagaaaactcaacaaaacaaaataaaaaccgcagttttctttcattctcaaccttatttgttctcttcctcagatcaactctatttgcagaagaaaccct |
213 |
Q |
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| T |
28712909 |
aagaaaactcaacaaaacaaaataaaaaccgcagttttctttcattctcaaccttatttgttctcttcctcaaatcaactctatttgcagaagaaaccct |
28713008 |
T |
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| Q |
214 |
atttgaatccaacgttttttgctgtcaagggtttaatcaacattat |
259 |
Q |
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| T |
28713009 |
atttgaatccaacgttttttgctgtcaagggtttaatcaacattat |
28713054 |
T |
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