View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9398_low_1 (Length: 815)
Name: NF9398_low_1
Description: NF9398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9398_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 724; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 18 - 814
Target Start/End: Complemental strand, 10850238 - 10849442
Alignment:
| Q |
18 |
gaaagcatcttgaagtctccaatcacaattttgtaatcagttaacctgtcaaagaacaagtccctaggcaaaactgcagcactcgggatgcataagtcta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10850238 |
gaaagcatcttgaagtctccaatcacaattttgtaatcagttaacctgtcaaagaacaagtccctaggcaaaactgcagcactcgggattcataagtcta |
10850139 |
T |
|
| Q |
118 |
caaccctcaattggtgtaaatgttttaactgagaaagaaatgaaatttgactttggtttggctctccatcgaccaccactttgatcaagctctttcttat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10850138 |
caaccctcaattggtgtaaatgttttaactgagaaagaaatgaaatttgactttggtttggctctccatcaaccaccactttgatcaagctctttcttat |
10850039 |
T |
|
| Q |
218 |
atacaactcttctaaacatgtcaaccttgatataaaattaggcgaaacccccttcattatggaacagtcactgatgtcaaataactgtagcttatttaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10850038 |
atacaactcttctaaacatgtcaaccttgatataaaattaggtgaaacccccttcattatggaacagtcactgatgtcaaataactgtagcttatctaag |
10849939 |
T |
|
| Q |
318 |
caccctaactcagctggcaagttttcaatttgagatccagaaaagctgagaattcttaattttttcagctctcctacgatggataaggtttcacctagag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10849938 |
aaccctaactcagctggcaagttttcaatttgagatccagaaaagctgagaattcttaattttttcagctctcctacgatggataagttttcacctagag |
10849839 |
T |
|
| Q |
418 |
cacaccgctccaaacaaagcattctgaggtttaataggcatttaatcgaagatggtgagcacgataaatgaaaaccagtcaatattaatactctgagttt |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10849838 |
cacaccgctccaaacaaagcattctgaggtttaataggaatttaatcgaagatggtaagcacgataaatgaaaaccagtcaatattaatattctgagttt |
10849739 |
T |
|
| Q |
518 |
ttccattccttcnnnnnnnttctcaggtattttcaaagaaggatcattgctgtcaatttggaagaacttaagctgaggacaatgtatgactttaggaagc |
617 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10849738 |
ttccattcctacaaaaaaattctcaggtattttcaaagaaggatcattgctgtcaatttggaagaacttaagctgaggacaatgtatgactttaggaagc |
10849639 |
T |
|
| Q |
618 |
tcgtcaatgatatcacagttgcgtatagagatagcactacacctctcgagtatatccttgtccggccagtcatctaatttgccatttctcaaagcaaata |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10849638 |
tcgtcaatgatatcacagttgcgtatagagatagcactacacctctcgagtatatccttgtccggccagtcatctaatttgccatttctcaaagcaaata |
10849539 |
T |
|
| Q |
718 |
catttttctccttgtgtgctatagacaaagcggcatcttgaaccatatcatgcatattgaaatgatcattggaactaccatccaacaccaaactcga |
814 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
10849538 |
catttttctccttgtgtgctatagacaaagcggcatcttgaaccatatcatgcatattgaaatgatcattggaactacaatccaacatcaaactcga |
10849442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 814
Target Start/End: Complemental strand, 10881669 - 10880874
Alignment:
| Q |
18 |
gaaagcatcttgaagtctccaatcacaattttgtaatcagttaacctgtcaaagaacaagtccctaggcaaaactgcagcactcgggatgcataagtcta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10881669 |
gaaagcatcttgaagtctccaatcacaattttgtaatcagttaacctgtcaaagaacaagtccctaggcaaaactgcagcactcgggatacataagtcta |
10881570 |
T |
|
| Q |
118 |
caaccctcaattggtgtaaatgttttaactgagaaagaaatgaaatttgactttggtttggctctccatcgaccaccactttgatcaagctctttcttat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
10881569 |
caaccctcaattggtgtaaatgttttaactgagaaagaaatgtaatttgactttggtttggttctccatctaccaccactttgatcaagctctttcttat |
10881470 |
T |
|
| Q |
218 |
atacaactcttctaaacatgtcaaccttgatataaaattaggcgaaacccccttcattatggaacagtcactgatgtcaaataactgtagcttatttaaa |
317 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||| | |||| ||||| ||||| |||||| ||||||||||||||||||||||||| |||| |
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|
| T |
10881469 |
atacaactcttctaaacaagtcaggcttgatataaaactaggtggaaccaccttcgttatgaaacagttgctgatgtcaaataactgtagcttatctaaa |
10881370 |
T |
|
| Q |
318 |
caccctaactcagctggcaagttttcaatttgagatccagaaaagctgagaattcttaattttttcagctctcctacgatggataaggtttcacctagag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||| ||||| |
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| T |
10881369 |
caccctaactcagctggcaagttttcaatttgagatccagaaaagctgagaattcttaactttttcagctttcctacgatggataagttgtcaactagaa |
10881270 |
T |
|
| Q |
418 |
cacaccgctccaaacaaagcattctgaggtttaataggcatttaatcgaagatggtgagcacgataaatgaaaaccagtcaatattaatactctgagttt |
517 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10881269 |
cacacctctctaaacaaagcattctgaggtttaataggcatttaatcgaagatggtaagcatgataaatgaaaaccagtcaatattaatactctgagttt |
10881170 |
T |
|
| Q |
518 |
ttccattccttcnnnnnnnttctcaggtattttcaaagaaggatcattgctgtcaatttggaagaacttaagctgaggacaatgtatgactttaggaagc |
617 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||| ||||| |||||||||||||||| |||||||||| |
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| T |
10881169 |
ttccattccttc-aaaaaattctcaggtattttcaaagaaggatcatcgttgtcgatttggaagaatttaagttgaggacaatgtatgaatttaggaagc |
10881071 |
T |
|
| Q |
618 |
tcgtcaatgatatcacagttgcgtatagagatagcactacacctctcgagtatatccttgtccggccagtcatctaatttgccatttctcaaagcaaata |
717 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || | |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10881070 |
tcgtcaatgatttcacagttgcgtatagagataacagtgcacctcccaagtatatctttgtccggccagtcatctaatttgccatttctcaaagcaaata |
10880971 |
T |
|
| Q |
718 |
catttttctccttgtgtgctatagacaaagcggcatcttgaaccatatcatgcatattgaaatgatcattggaactaccatccaacaccaaactcga |
814 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |
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|
| T |
10880970 |
catttttctccttgtgtgctatagacaaagcggcatcttgagccatatcatgcatattgaaatgatcactggaactaccatccgacatcaaactcga |
10880874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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