View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9398_low_4 (Length: 339)
Name: NF9398_low_4
Description: NF9398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9398_low_4 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 107509 - 107184
Alignment:
| Q |
14 |
gcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107509 |
gcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaaga |
107410 |
T |
|
| Q |
114 |
caacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107409 |
caacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatg |
107310 |
T |
|
| Q |
214 |
atgatagaagagagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaat |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107309 |
atgatagaagggagatgcagtgtgaaacacaccatgacagccttgaacagcagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaat |
107210 |
T |
|
| Q |
314 |
ctctccttagcaccttcaagcttaac |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
107209 |
ctctccttagcaccttcaagcttaac |
107184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 88146 - 87820
Alignment:
| Q |
13 |
agcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaag |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||| ||||| |
|
|
| T |
88146 |
agcacagaaatcagcatctgtaaaccaagtctcatcaacaacaacatcaggagttcgaggcttcccattataagcaacagcagcaatagaagaagttaaa |
88047 |
T |
|
| Q |
113 |
acaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacat |
212 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
88046 |
acaacacgtttgagtgatggggatttagcacatgagttgagaacattgagagtccctttgagagcaggatcaatcaattcagcctgaggatccttgacat |
87947 |
T |
|
| Q |
213 |
catgatagaagagagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaa |
312 |
Q |
| |
|
||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| || || | |||||||||||||||||| |||||||| || |
|
|
| T |
87946 |
catgataaaagggagatgcagtgtgaaagacaccatgacagccttgaacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaa |
87847 |
T |
|
| Q |
313 |
tctctccttagcaccttcaagcttaac |
339 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
87846 |
tctctccttagcaccatcaagcttaac |
87820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 2707190 - 2707050
Alignment:
| Q |
28 |
atcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagt |
127 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||| ||||||||| |||||||||||| ||||| |||||||||||| ||||||||||| || |
|
|
| T |
2707190 |
atcagtaaaccaagtttcatcgacaactacatcgagagtttgaggctttttattgtacgcaaccgcagcgatagaagaggttaatacaacacgtttcaga |
2707091 |
T |
|
| Q |
128 |
aatggcgatttggcacatgatttgagaacattgagagtccc |
168 |
Q |
| |
|
|||| |||| ||||||||||| || ||||| |||||||| |
|
|
| T |
2707090 |
gatggaaattttgcacatgatttcagcacatttagagtccc |
2707050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 44784716 - 44784893
Alignment:
| Q |
13 |
agcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
44784716 |
agcacagaaatcagcatcagtaaaccaagtctcatcaacaacaacatcaggagttcgaggctttccattgtatgcaacagcagcgacagaagatgttaag |
44784815 |
T |
|
| Q |
113 |
acaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaac |
190 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
44784816 |
acaacacgtttgagtgatggggattttgcacatgagttgagaacattgagagtccctttgagcgcaggatcaatcaac |
44784893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 25934307 - 25934237
Alignment:
| Q |
129 |
atggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
199 |
Q |
| |
|
|||| ||||| |||||||||| |||||||| ||||| || || ||||| ||||||||||||||||||||| |
|
|
| T |
25934307 |
atggtgattttgcacatgattgaagaacattaagagttcccttcagtgccggatcaatcaactcagcctga |
25934237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 26101933 - 26101881
Alignment:
| Q |
140 |
gcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactc |
192 |
Q |
| |
|
||||||||||| |||||||| ||||| || || ||||| |||||||||||||| |
|
|
| T |
26101933 |
gcacatgatttaagaacattaagagttcccttaagtgccggatcaatcaactc |
26101881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 29549082 - 29548974
Alignment:
| Q |
230 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
329 |
Q |
| |
|
||||| ||||| |||||||| || ||||||| |||||||||||| | || | |||||||| || ||||||||| ||||| || || ||||| ||||| | |
|
|
| T |
29549082 |
gcagtatgaaagacaccatggcatccttgaataacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccat |
29548983 |
T |
|
| Q |
330 |
caagcttaa |
338 |
Q |
| |
|
|||| |||| |
|
|
| T |
29548982 |
caagtttaa |
29548974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University