View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_high_3 (Length: 415)
Name: NF9399_high_3
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_high_3 |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 43 - 415
Target Start/End: Original strand, 4856234 - 4856606
Alignment:
| Q |
43 |
atgtcaggtcgcgttgatttttaggctgtagggcaatgcgtgtttcggaacttctcgagtttcttcgagaaagggtagtgctttttgcagaaatcgggtg |
142 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
4856234 |
atgtcaggtcgcgttgatttttaggctggagggcaatgtttgtttcggaagttctcgactttcttcaacaaagggtagtgctttttgcagaaatcgggta |
4856333 |
T |
|
| Q |
143 |
tatggggtatatgtactggtttatctttcgggattaaatttttgatttttgggattaatgcttcaactgcgggaccaaagctaacagcatcagcaaaatg |
242 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4856334 |
tatggggtatatgtactggtttatcttttgggattaaatttttgatttttgggattaatgcttcaactgcgggaccaaagctaacagcatcagcaaaatg |
4856433 |
T |
|
| Q |
243 |
ttgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4856434 |
ttgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggt |
4856533 |
T |
|
| Q |
343 |
gcataatacatatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagtc |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4856534 |
gcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtc |
4856606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 43 - 415
Target Start/End: Original strand, 4877969 - 4878341
Alignment:
| Q |
43 |
atgtcaggtcgcgttgatttttaggctgtagggcaatgcgtgtttcggaacttctcgagtttcttcgagaaagggtagtgctttttgcagaaatcgggtg |
142 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
4877969 |
atgtcaggtcgcgttgatttttaggctggagggcaatgtttgtttcggaagttctcgactttcttcaacaaagggtagtgctttttgcagaaatcgggta |
4878068 |
T |
|
| Q |
143 |
tatggggtatatgtactggtttatctttcgggattaaatttttgatttttgggattaatgcttcaactgcgggaccaaagctaacagcatcagcaaaatg |
242 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4878069 |
tatggggtatatgtactggtttatcttttgggattaaatttttgatttttgggattaatgcttcaactgcgggaccaaagctaacagcatcagcaaaatg |
4878168 |
T |
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| Q |
243 |
ttgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggt |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4878169 |
ttgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggt |
4878268 |
T |
|
| Q |
343 |
gcataatacatatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagtc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4878269 |
gcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtc |
4878341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 43 - 415
Target Start/End: Original strand, 4852263 - 4852635
Alignment:
| Q |
43 |
atgtcaggtcgcgttgatttttaggctgtagggcaatgcgtgtttcggaacttctcgagtttcttcgagaaagggtagtgctttttgcagaaatcgggtg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
4852263 |
atgtcaggtcgcgttgatttttaggctggagggcaatgtttgtttcggaagttctcgactttcttcaacaaagggtagtgctttttgcagaaatcgggta |
4852362 |
T |
|
| Q |
143 |
tatggggtatatgtactggtttatctttcgggattaaatttttgatttttgggattaatgcttcaactgcgggaccaaagctaacagcatcagcaaaatg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4852363 |
tatggggtatatgtactggtttatcttttgggattaaatttttgatttttgggattaatgcttcaactgcgggaccaaagctaacagcatcagcaaaatg |
4852462 |
T |
|
| Q |
243 |
ttgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4852463 |
ttgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggt |
4852562 |
T |
|
| Q |
343 |
gcataatacatatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagtc |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
4852563 |
gcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcgatctaagtc |
4852635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 244 - 415
Target Start/End: Original strand, 4871516 - 4871686
Alignment:
| Q |
244 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
4871516 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattattatt-gtgttggtg |
4871614 |
T |
|
| Q |
344 |
cataatacatatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagtc |
415 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4871615 |
cataatacatatggagttaactggctttatactagttagagactcaatgtgagtttatggtcaatctaagtc |
4871686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 244 - 415
Target Start/End: Original strand, 4845757 - 4845927
Alignment:
| Q |
244 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
4845757 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattattatt-gtgttggtg |
4845855 |
T |
|
| Q |
344 |
cataatacatatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagtc |
415 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| |
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|
| T |
4845856 |
cataatacataggtagttaactggctttatactagttagagactcaatgtgattttttggtcaatctaagtc |
4845927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 244 - 414
Target Start/End: Original strand, 4860733 - 4860904
Alignment:
| Q |
244 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
343 |
Q |
| |
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||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
4860733 |
tgttgaggaacaaacataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttggtg |
4860832 |
T |
|
| Q |
344 |
cataatacatatggag-tatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagt |
414 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||| |||||||||||||||| ||| ||||||| |||| |
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| T |
4860833 |
cataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatcaaagt |
4860904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 244 - 414
Target Start/End: Original strand, 4880740 - 4880911
Alignment:
| Q |
244 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
343 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
4880740 |
tgttgaggaacaaacataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttggtg |
4880839 |
T |
|
| Q |
344 |
cataatacatatggag-tatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagt |
414 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||| |||||||||||||||| ||| ||||||| |||| |
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| T |
4880840 |
cataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatcaaagt |
4880911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 244 - 414
Target Start/End: Original strand, 4841816 - 4841985
Alignment:
| Q |
244 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
343 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
4841816 |
tgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattatt-gtgttggtg |
4841914 |
T |
|
| Q |
344 |
cataatacatatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagt |
414 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
4841915 |
cataatacatatggaattaactggttttatactaattagagactcaatgtgagtttatggtcaatctaagt |
4841985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 251 - 415
Target Start/End: Original strand, 4826395 - 4826559
Alignment:
| Q |
251 |
gagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataata |
350 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4826395 |
gagcaagcataagagcagcaaggaataccactagcaaggataagaaaaaggaattagccactttaagaagtgatattattattagtgttggtgcataata |
4826494 |
T |
|
| Q |
351 |
catatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagtc |
415 |
Q |
| |
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|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4826495 |
catagagagttaactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtc |
4826559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 227 - 415
Target Start/End: Original strand, 4835116 - 4835301
Alignment:
| Q |
227 |
cagcatcagcaaaatgttgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatat |
326 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
4835116 |
cagcatcagcaaaatgttg---aggaccaaacataagagcagcaaggaataccactagcaaggataagaaaaaggatttagccattttaagaagtgatat |
4835212 |
T |
|
| Q |
327 |
aattattagtgttggtgcataatacatatggagtatactggttttatactagtttgagactcaatgtgagtttatggtcaatctaagtc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||||| ||||| |
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| T |
4835213 |
tattattagtgttggtgcataatacatatggagttaactggttttatactaattagagactcaaagtgagtttatggtcaatcaaagtc |
4835301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 254 - 397
Target Start/End: Complemental strand, 21703892 - 21703749
Alignment:
| Q |
254 |
caagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacat |
353 |
Q |
| |
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||||||||| |||||| |||||| ||||| |||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |||| |
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| T |
21703892 |
caagcataagagcagcgtggaataccactagtaaggacaagaaaaaagaattagccattttaagaagtgatattaatattagtgttggtgcataagacat |
21703793 |
T |
|
| Q |
354 |
atggagtatactggttttatactagtttgagactcaatgtgagt |
397 |
Q |
| |
|
| | ||| || ||||||||||||||| ||||||||||| |||| |
|
|
| T |
21703792 |
aggaagttaaccggttttatactagttagagactcaatgggagt |
21703749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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