View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_high_5 (Length: 344)
Name: NF9399_high_5
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_high_5 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 12026473 - 12026790
Alignment:
| Q |
19 |
cttcttaatagctttcaatacttcaaacgtagtaaagctttcaatcgcctcatacgatacacctgcaactactttctcaaaacgactgcggattgagtct |
118 |
Q |
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| T |
12026473 |
cttcttaagagctttcaatacttcaaacatagtaaatcttttaatcctctcatgcgatacacctgcaactactttctccaaacgactgcggattgagtct |
12026572 |
T |
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| Q |
119 |
ggcagcaaatccagcaccggaccgtggcgcaaatcagaaacttctccaacctcgacacttgacctgttgtccccattaacatatccagaaccttctccag |
218 |
Q |
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| T |
12026573 |
ggcagcaaatccagcaccggaccttggcgcaaatcagaaacttctccaacctcgacacttgacctgttgtccccattaacatatccagaaccttctccaa |
12026672 |
T |
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| Q |
219 |
cctgataacttgaaaatctatcaatttctctgcacaaaagcaaaaaatcatcgtcattcacagcatttttctctgggacagagtttttgtccattggaat |
318 |
Q |
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| T |
12026673 |
cctgataacttgaaaatctatcaatttctctgcaaaaaagcaaaaaatcatcgtcattcacagcatttttctctgggacagagtttttgtccattggaat |
12026772 |
T |
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| Q |
319 |
atctttgcaagaattatc |
336 |
Q |
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| T |
12026773 |
atctttgcaagaattatc |
12026790 |
T |
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Target: scaffold0504 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 7786 - 7747
Alignment:
| Q |
263 |
aaatcatcgtcattcacagcatttttctctgggacagagt |
302 |
Q |
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| T |
7786 |
aaatcaacgtcgttcacagcatttttctctgggacagagt |
7747 |
T |
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