View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9399_high_6 (Length: 314)
Name: NF9399_high_6
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 49654716 - 49654432
Alignment:
| Q |
17 |
agtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49654716 |
agtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacga |
49654617 |
T |
|
| Q |
117 |
ttgctgacgtgtagggctgagattcacttgccccacaacctgacctggacactggaattctgctccagtgtctgcaggtgcaccagtagatgctgaactc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
49654616 |
ttgctgacgtgtagggctgagattcacttgccccacaacctgacctggacactggaattctgctccagtgtgtgcaggtgcaccggtagatgctgaactc |
49654517 |
T |
|
| Q |
217 |
aacccattgcttccagttccactctgagttttcttcatcttcttcttaccagaatctcctccgccactttgaccactcctgttct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49654516 |
aacccattgcttccagttccactctgagttttcttcatcttcttcttaccagaatctcctccgccactttgaccactcttgttct |
49654432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 16486363 - 16486263
Alignment:
| Q |
17 |
agtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacga |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16486363 |
agtaagaaggacaacccattgttcgaatgggacctaatctgttgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtacga |
16486264 |
T |
|
| Q |
117 |
t |
117 |
Q |
| |
|
| |
|
|
| T |
16486263 |
t |
16486263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 21816547 - 21816647
Alignment:
| Q |
17 |
agtaagaaggacaacccattgttcccatgggacataatctgttgtaagttgcatattgtaccaaaggaggataacatgtttctggatacaacatgtacga |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21816547 |
agtaagaaggacaacccattgttcgaatgggacctaatctgttgtaagttacatattgtaccaaaggaggataacatgtttctgcatacaacatgtacga |
21816646 |
T |
|
| Q |
117 |
t |
117 |
Q |
| |
|
| |
|
|
| T |
21816647 |
t |
21816647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 14381448 - 14381479
Alignment:
| Q |
115 |
gattgctgacgtgtagggctgagattcacttg |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14381448 |
gattgctgacgtgtagggctgagattcacttg |
14381479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University