View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_high_9 (Length: 255)
Name: NF9399_high_9
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 32724681 - 32724442
Alignment:
| Q |
1 |
cccgatttccgccatggtagtcgtgttattgcacggaagtggaagttgaactatttctgaaattaatttaaaaaacaaatagaaggaatgaacgtagtgg |
100 |
Q |
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| T |
32724681 |
cccgatttccgccatggtagtcgtgttattgcacggaagtggaagtcgaactatttctgaaattaatttaaaaaacagatagaaggaatgaacgtagtgg |
32724582 |
T |
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| Q |
101 |
tgaaagtaaatgttgtatcattaatattattcatgaaagaattctgaaagaaaaagatattaaaattaaaatttagaaacatacttggcaatgatttttt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32724581 |
tgaaagtaaatgttgtatcatgaatattattcatgaaagaattttgaaag-aaacgatattaaaattaaaatttagaaacatacttggcaatgatttttt |
32724483 |
T |
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| Q |
201 |
cctcttctgtaagtgatttcacttttttcaattaacctatg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
32724482 |
cctcttctgtaagtgatttcacttttttcaattaacttatg |
32724442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 4001937 - 4001811
Alignment:
| Q |
103 |
aaagtaaatgttgtatcattaatattattcatgaaagaattctgaaagaaaaagatattaaaattaaaatttagaaacatacttggcaatg-attttttc |
201 |
Q |
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|||||||||||||||| || ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| || || |||| |
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| T |
4001937 |
aaagtaaatgttgtattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcattgtcttctttc |
4001838 |
T |
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| Q |
202 |
ctcttctgtaagtgatttcactttttt |
228 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
4001837 |
ctcttatgtaagtgatttcactttttt |
4001811 |
T |
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