View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_low_10 (Length: 384)
Name: NF9399_low_10
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 13967213 - 13966861
Alignment:
| Q |
19 |
tttagaacttaccgaaagttgcagtattgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgac |
118 |
Q |
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| T |
13967213 |
tttagaacttaccgaaagttgcagttttgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgac |
13967114 |
T |
|
| Q |
119 |
agtaacataactcatttccttagcaacattaacagtctctttataaacaccagccttaacatggatcacaaaaggtactgcattttgaggaggaacagtc |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |
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| T |
13967113 |
agtaacataattcatttccttagcaacattaacagtctctttatatacaccagccttaacatagatcacaaaaggtgctgcatttgtaggaggaacagtc |
13967014 |
T |
|
| Q |
219 |
ttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagctttaacatttccaccagcaagaagatgcctatgcccgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13967013 |
ttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagctttaacatttccaccagcaagaagatgtctatgcccgt |
13966914 |
T |
|
| Q |
319 |
cactaacccatgaaggaataccatcatcagataaaagcctcctactaacacca |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13966913 |
cactaacccatgaaggaataccatcatcagataaaagcctcctactaacacca |
13966861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 45 - 371
Target Start/End: Complemental strand, 13977355 - 13977029
Alignment:
| Q |
45 |
ttgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgacagtaacataactcatttccttagcaa |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13977355 |
ttgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgacagtaacataattcatttccttagcaa |
13977256 |
T |
|
| Q |
145 |
cattaacagtctctttataaacaccagccttaacatggatcacaaaaggtactgcattttgaggaggaacagtcttaagagcatcagttaatgtcttaaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13977255 |
cattaacagtctctttataaacaccagccttaacatggatcacaaaaggtactgcattttgaggaggaacagtcttaagagcatcagttaatgtcttaaa |
13977156 |
T |
|
| Q |
245 |
ctgtccactcccatcttgagccacaacagcattagctttaacatttccaccagcaagaagatgcctatgcccgtcactaacccatgaaggaataccatca |
344 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13977155 |
ctgtccactcccatcttgagccacaacagcatcagctttaacatttccaccagcaagaagatgtctatgcccgtcactaacccatgaaggaataccatca |
13977056 |
T |
|
| Q |
345 |
tcagataaaagcctcctactaacacca |
371 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
13977055 |
tcagataaaagcctcctactaacacca |
13977029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 13959636 - 13959326
Alignment:
| Q |
25 |
acttaccgaaagttgcagtattgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgacagtaac |
124 |
Q |
| |
|
|||||||||| |||||||| ||||||| || |||||| ||||| |||||||||||||||||||||||||| | ||||||||| ||||||| ||||| |
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| T |
13959636 |
acttaccgaaggttgcagtgttgtaaggtaggagaccatccgcataattgaggctaccagtgaatttggtctttgcaggaccatcaccaatgatggtaac |
13959537 |
T |
|
| Q |
125 |
ataactcatttccttagcaacattaacagtctctttataaacaccagccttaacatggatcacaaaaggtactgcattttgaggaggaacagtcttaaga |
224 |
Q |
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| || ||| ||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||| |||||| | | |||||||||||||| | |
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| T |
13959536 |
aaaagccatatccttaggcacattaacagtctcattataaacaccttccttaacataaatcacaaaattctgtgcattattggcaggaacagtcttaata |
13959437 |
T |
|
| Q |
225 |
gcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagctttaacatttccaccagcaagaagatgcctatgcccgtcactaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| || | |||||||||| | || ||||| || |||| |
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| T |
13959436 |
gcatcagttaatgtcttaaactgtccacttccatcttgagccacaacaacattaggtttaacagttgcttcagcaagaagtcgtctttgcccttcgctaa |
13959337 |
T |
|
| Q |
325 |
cccatgaagga |
335 |
Q |
| |
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||||| ||||| |
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| T |
13959336 |
cccataaagga |
13959326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 13968411 - 13968361
Alignment:
| Q |
59 |
accatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatc |
109 |
Q |
| |
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|||||||||||| | ||||||||| |||||||||||||| | ||||||||| |
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| T |
13968411 |
accatcagcataatggaggctaccggtgaatttggtctttgcaggaccatc |
13968361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 49865400 - 49865502
Alignment:
| Q |
24 |
aacttaccgaaagttgcagtattgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgacagtaa |
123 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | | ||||||||||||| | ||| ||||| ||| ||||||| || |||||||||||||| | ||||| |
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| T |
49865400 |
aacttaccgaatgttgcggtattgtaagtctgcacaccatcagcatagcttttgctgccagtaaatatggtctttgtgggaccatcgccaataatagtaa |
49865499 |
T |
|
| Q |
124 |
cat |
126 |
Q |
| |
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||| |
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|
| T |
49865500 |
cat |
49865502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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