View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9399_low_12 (Length: 357)

Name: NF9399_low_12

Description: NF9399

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9399_low_12

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 83; E-Value: 3e-39

Query Start/End: Original strand, 8 - 188

Target Start/End: Original strand, 40351879 - 40352063

Alignment:

Q	8	gagcagagaattttacatgcatatgttaacatatgtttataacaaatatttgtaggttaca---tttannnnnnnnatattaccacaataattcagcaca	104	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40351879	gagcaaagaattttacatgcatatgtttacgtatgtttataacaaatatttgtaggttacatttttttttttttttatattaccacaataattcagcaca	40351978	T

Q	105	ttaacaaca-nnnnnnnnaattatcatactatcctgccatgtagaaagaagtttcaaatcttttttaaataagtttggtcaaaga	188	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	40351979	ttaacaacatttttttttaattatcatactatcttgccatgtagaaagaagtttcaaaacttttttaaataagcttgatcaaaga	40352063	T

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Target: chr3; HSP #2

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 288 - 341

Target Start/End: Original strand, 40352190 - 40352243

Alignment:

Q	288	gctgatatctcttcactacaaagttaaaagcgggtaactgttgaaaaggtaaaa	341	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40352190	gctgatatctcttcactacaaagtcaaaagtggataactattgaaaaggtaaaa	40352243	T

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