View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_low_17 (Length: 308)
Name: NF9399_low_17
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_17 |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 43 - 301
Target Start/End: Original strand, 11541784 - 11542042
Alignment:
| Q |
43 |
agcattcgaaatttggttatcaagtcgtttaacagcaaacaagtgactcatggttcatatggtaagtattaaactctttcttatttaaggtaaaatcatt |
142 |
Q |
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| T |
11541784 |
agcattcgaaatttggttatcaagtcgtttaacagcaaacaagtgactcatggttcatatggtaagtattaaactctttcttatttaaggtaaaatcatt |
11541883 |
T |
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| Q |
143 |
atgttatgtttgatgcatcacataataacttgaagcacatgttgcacatttccttccaaaaattaccaaacttcaaagcatagcaaaatacagtcaacta |
242 |
Q |
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| T |
11541884 |
atgttatgtttgatgtatcacataataacttgaagcaaatgttgcacatttccttccaaaaattaccaaacttcaaagcatagcaaaatacagtcaacta |
11541983 |
T |
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| Q |
243 |
tcatgcaagaaagtttgaattacattcattttatttagtacagcttccatcctatgctt |
301 |
Q |
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| T |
11541984 |
tcatgcaagaaagtttgaattacattcattttatttagtacagcttccatcttatgctt |
11542042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 11541723 - 11541760
Alignment:
| Q |
19 |
gccacagtcaacaacaataacagtagcattcgaaattt |
56 |
Q |
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| T |
11541723 |
gccacagtcaacaacaataacagtagcattcgaaattt |
11541760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 44788964 - 44789001
Alignment:
| Q |
248 |
caagaaagtttgaattacattcattttatttagtacag |
285 |
Q |
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| T |
44788964 |
caagaaagtttgaactacattcattttatttaatacag |
44789001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 299
Target Start/End: Complemental strand, 172326 - 172160
Alignment:
| Q |
121 |
tcttatttaaggtaaaatcattatgttatgtttgatgcatcacataataacttgaagcacatgttgcacatttccttccaaaaattaccaaacttcaaag |
220 |
Q |
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| T |
172326 |
tcttattaaaggtaaaatcattctgtaatgtttgatgtatcac---ataacttgcagtataagttccacatttccttac-aaaattgcaaagcttcaaag |
172231 |
T |
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| Q |
221 |
catagcaaaatacagtcaactatcatgcaagaaagtttgaattacattcattttatttagtacagcttccatcctatgc |
299 |
Q |
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| T |
172230 |
cataacaaaatacagt--------atacaagaaagtttgaactactttgatcttatttagtacagcttccattctatgc |
172160 |
T |
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