View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9399_low_18 (Length: 296)
Name: NF9399_low_18
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 34311834 - 34311557
Alignment:
| Q |
11 |
cagagatcgaataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatg |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34311834 |
cagagatcggataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaataaccaacaagaataagcaagagaaatg |
34311735 |
T |
|
| Q |
111 |
gtacgagtaacatgttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatg-----nnnnnnnnna |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34311734 |
gtacgagtaacatgttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatgttttttttttttttt |
34311635 |
T |
|
| Q |
206 |
aaattgctggtatgttatatttataggttgtaaaaagctacatgcatggttcttgaagattc-tataaatgacatatg |
282 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34311634 |
aagttgctggtatgttatatttataggttgtaaaaagttgcatgcatggttcttgaagattcatataaatgacatatg |
34311557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 34323138 - 34323273
Alignment:
| Q |
12 |
agagatcgaataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaac---aagaataagcaagagaaa |
108 |
Q |
| |
|
|||||||| | ||||| |||||||| ||||| |||||||||| | | ||||||||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
34323138 |
agagatcggacaagagtgtgttgggtgaatccatgaatggtagcaataacccttttgcattggaaggaaaattaccaacaagaagaataatcaagagaat |
34323237 |
T |
|
| Q |
109 |
tggtacgagtaacatgttgagttgttctagcctcat |
144 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||| |
|
|
| T |
34323238 |
tggtataagcgacatgttgagttgttgtagcctcat |
34323273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 34314242 - 34314160
Alignment:
| Q |
62 |
ccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
144 |
Q |
| |
|
|||||||| || | ||||||| |||| ||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
34314242 |
ccttttgctttggtaggaaaaccaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34314160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 34305021 - 34305074
Alignment:
| Q |
91 |
aagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
144 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
34305021 |
aagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34305074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 34323390 - 34323453
Alignment:
| Q |
218 |
tgttatatttataggttgtaaaaagctacatgcatggttcttgaagattctataaatgacatatg |
282 |
Q |
| |
|
|||| |||||||||||| ||||| | | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34323390 |
tgttgtatttataggtt-taaaatgttgcatgcataattcttgaagattctataaatgacatatg |
34323453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 34317511 - 34317578
Alignment:
| Q |
77 |
ggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
144 |
Q |
| |
|
|||||| ||||| |||||| || ||||| ||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
34317511 |
ggaaaactaccagcaagaacaatcaagaaaaaaagtactagtaacatgttgagttgttgtagcctcat |
34317578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 33426045 - 33426001
Alignment:
| Q |
97 |
aagcaagagaaatggtacgagtaacatgttgagttgttctagcct |
141 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
33426045 |
aagcaagaaaaatggtactggtaacatgttgagttgttgtagcct |
33426001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University