View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9399_low_24 (Length: 246)
Name: NF9399_low_24
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38474014 - 38473785
Alignment:
| Q |
1 |
gaaaagcgatgagaaattgttgcgcaagttttttagcattgagtacaagtggcaagtgaggtgtagatcgtagatagtagaaatatggtgttttagtccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38474014 |
gaaaagcgatgagaaattgttgcgcaagttttttagcattgagtacaagtggcaagtgaggtgtagatcgtagatagtagaaatatggtgttttagtccc |
38473915 |
T |
|
| Q |
101 |
aaatcactagtcaagatatataacataggtggagttattctatatatataacatcacgatgttcttccaagtatatacatggagatgtgtctatcactgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38473914 |
aaatcactagtcaagatatataacataggtggtgttattctatatatataacatcacgatgttcttccaagtatatacatggagatgtgtctatcactgt |
38473815 |
T |
|
| Q |
201 |
ctcaatgacatggctccgtttcttattgat |
230 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
38473814 |
ctcaatgacatggctccgttccttattgat |
38473785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 38489824 - 38489744
Alignment:
| Q |
70 |
gtagatagtagaaatatggtgttttagtcccaaatcactagtcaagatatataacataggtggagttattctatatatata |
150 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | | ||||| |||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
38489824 |
gtagagagtagaaatatggtgttttagtcccacaccgctagtaaagatacataacatacatagagttattctatatatata |
38489744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University