View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_low_26 (Length: 244)
Name: NF9399_low_26
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 38474205 - 38474427
Alignment:
| Q |
5 |
aacttcaaattcatcaagtgcaatcaacattttacatgactgatggaagaacaaactttgctatatgtagaaaaggttgatggaactatgcttaaacttt |
104 |
Q |
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| T |
38474205 |
aacttcaaattcatcaagtgcaatcaacattttacatgactgatggaagaacaaactttgctatatgtagaaaaggttgatggaactatgcttaaacttt |
38474304 |
T |
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| Q |
105 |
gctatggataagttttagataaagattttgttgagccaacagaaaagggaaaatc-aaagttgatnnnnnnnncataagtgaaaatatgatcgtctattc |
203 |
Q |
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| T |
38474305 |
gctatggataagttttagatatagattttgttgagccaacagaaaaaggaaaatcaaaagttgataaaaaaaagataagtgaaaatacgatcgtctattc |
38474404 |
T |
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| Q |
204 |
aatgaaaaagctttgtttttaat |
226 |
Q |
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| T |
38474405 |
aatgaaaaagctttgtttttaat |
38474427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 38490000 - 38490072
Alignment:
| Q |
19 |
caagtgcaatcaacattttacatgactgatggaagaacaaactttgctatatgtagaaaaggttgatggaactat |
93 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38490000 |
caagtgcaatcaacattttacatgtctgatggaagaacaaactttgc--tatgtagaaaaggttgatggaactat |
38490072 |
T |
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